Variant report

Variant	rs1551049
Chromosome Location	chr4:62105676-62105677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10018853	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11723103	0.87[ASN][1000 genomes]
rs11731649	0.87[ASN][1000 genomes]
rs13123859	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13127903	0.87[ASN][1000 genomes]
rs13140257	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1505664	0.85[ASN][1000 genomes]
rs1505682	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2342455	0.86[ASN][1000 genomes]
rs2342486	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28634991	0.82[ASN][1000 genomes]
rs972616	0.87[ASN][1000 genomes]
rs974538	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879074	chr4:62000391-62109770	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62095200-62110800	Weak transcription	Fetal Muscle Leg	muscle
2	chr4:62101600-62110800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:62102400-62105800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:62103800-62109000	Weak transcription	Brain Substantia Nigra	brain
5	chr4:62103800-62110200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr4:62103800-62110600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:62104000-62108000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr4:62104000-62109600	Weak transcription	Brain Anterior Caudate	brain
9	chr4:62104800-62105800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr4:62105200-62105800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:62105200-62110600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:62105200-62110800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr4:62105200-62111600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr4:62105400-62105800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr4:62105400-62110600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr4:62105400-62110800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:62105400-62112600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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