Variant report

Variant	rs12354862
Chromosome Location	chr10:19473056-19473057
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10508575	0.96[EUR][1000 genomes]
rs10508577	0.93[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10827006	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10827011	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10827018	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10827025	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10827037	0.99[ASN][1000 genomes]
rs10827038	0.99[ASN][1000 genomes]
rs10827039	1.00[ASN][1000 genomes]
rs10827040	1.00[ASN][1000 genomes]
rs10827041	0.99[ASN][1000 genomes]
rs10827042	0.99[ASN][1000 genomes]
rs10827044	1.00[ASN][1000 genomes]
rs10827056	0.90[ASN][1000 genomes]
rs10827060	0.97[ASN][1000 genomes]
rs11008746	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11008761	0.91[ASN][1000 genomes]
rs11008767	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11008785	0.90[EUR][1000 genomes]
rs11008814	0.97[EUR][1000 genomes]
rs11008818	0.97[EUR][1000 genomes]
rs11008836	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11008837	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11008868	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11008870	0.99[ASN][1000 genomes]
rs11008874	0.99[ASN][1000 genomes]
rs11008876	1.00[ASN][1000 genomes]
rs11008880	1.00[ASN][1000 genomes]
rs11008881	0.99[ASN][1000 genomes]
rs11008883	0.99[ASN][1000 genomes]
rs11008892	0.99[ASN][1000 genomes]
rs11008893	0.99[ASN][1000 genomes]
rs11008894	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11008895	1.00[ASN][1000 genomes]
rs11511059	0.97[EUR][1000 genomes]
rs11591867	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595593	0.93[EUR][1000 genomes]
rs12265678	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12354920	0.93[EUR][1000 genomes]
rs12357517	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12359056	0.93[EUR][1000 genomes]
rs12359081	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12569596	0.85[ASN][1000 genomes]
rs12569779	0.98[ASN][1000 genomes]
rs12570003	0.98[ASN][1000 genomes]
rs12570716	0.88[ASN][1000 genomes]
rs12572633	1.00[ASN][1000 genomes]
rs12572786	0.88[ASN][1000 genomes]
rs12573393	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12573770	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16918365	0.83[ASN][1000 genomes]
rs17720401	0.97[EUR][1000 genomes]
rs17720897	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2245146	0.98[ASN][1000 genomes]
rs2245151	0.98[ASN][1000 genomes]
rs2245223	0.98[ASN][1000 genomes]
rs2245235	0.98[ASN][1000 genomes]
rs2245456	0.98[ASN][1000 genomes]
rs2358347	1.00[YRI][hapmap]
rs2358348	0.98[ASN][1000 genomes]
rs2358350	0.82[ASN][1000 genomes]
rs2358351	0.97[ASN][1000 genomes]
rs2358352	0.98[ASN][1000 genomes]
rs2358353	0.98[ASN][1000 genomes]
rs2358356	0.98[ASN][1000 genomes]
rs2358357	0.98[ASN][1000 genomes]
rs2583647	0.98[ASN][1000 genomes]
rs2583656	0.98[ASN][1000 genomes]
rs2782324	0.98[ASN][1000 genomes]
rs2782325	0.98[ASN][1000 genomes]
rs2782326	0.97[ASN][1000 genomes]
rs2782327	0.98[ASN][1000 genomes]
rs2803833	0.97[ASN][1000 genomes]
rs2803834	0.98[ASN][1000 genomes]
rs2803835	0.98[ASN][1000 genomes]
rs4269836	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[ASN][1000 genomes]
rs4307627	0.87[ASN][1000 genomes]
rs4471331	0.83[ASN][1000 genomes]
rs4488099	0.97[ASN][1000 genomes]
rs4611097	0.97[ASN][1000 genomes]
rs55654735	0.99[ASN][1000 genomes]
rs55755110	0.99[ASN][1000 genomes]
rs56118549	0.99[ASN][1000 genomes]
rs58827581	0.92[ASN][1000 genomes]
rs61249651	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6481791	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[ASN][1000 genomes]
rs7081980	0.97[ASN][1000 genomes]
rs7087675	0.97[ASN][1000 genomes]
rs7090849	0.98[ASN][1000 genomes]
rs7091835	0.95[ASN][1000 genomes]
rs7091841	0.95[ASN][1000 genomes]
rs72786548	0.98[ASN][1000 genomes]
rs72786556	0.98[ASN][1000 genomes]
rs72786571	0.99[ASN][1000 genomes]
rs72788010	0.84[ASN][1000 genomes]
rs72790786	0.90[ASN][1000 genomes]
rs72792619	0.99[ASN][1000 genomes]
rs74118870	0.98[ASN][1000 genomes]
rs74118871	0.98[ASN][1000 genomes]
rs74118879	0.83[ASN][1000 genomes]
rs7902704	0.98[ASN][1000 genomes]
rs7916062	0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427857	chr10:19253828-19599493	Enhancers Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv550126	chr10:19270068-19572729	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv466764	chr10:19400845-19979434	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv550128	chr10:19400845-19979434	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv2750885	chr10:19407891-19836364	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1043780	chr10:19415575-19827284	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1035870	chr10:19415575-19832047	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv550129	chr10:19417181-19834795	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1035591	chr10:19417883-19823164	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv540506	chr10:19417883-19823164	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	esv2750886	chr10:19432774-19832094	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv831802	chr10:19449261-19585888	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv430133	chr10:19452640-19490727	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv428552	chr10:19457788-19623823	Genic enhancers Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv1047513	chr10:19461947-19810770	Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv540507	chr10:19461947-19810770	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19438400-19489000	Weak transcription	Fetal Intestine Small	intestine
2	chr10:19457600-19475800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:19468000-19475800	Weak transcription	Fetal Intestine Large	intestine
4	chr10:19473000-19473200	Enhancers	Fetal Lung	lung

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