Variant report

Variant	rs12354980
Chromosome Location	chr10:95951880-95951881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95949567..95952050-chr10:95954535..95957400,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10748621	0.85[AMR][1000 genomes]
rs10748622	0.85[AMR][1000 genomes]
rs10786154	0.85[AMR][1000 genomes]
rs10786155	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882403	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187811	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17093867	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2689693	0.81[AMR][1000 genomes]
rs2689698	0.82[AMR][1000 genomes]
rs2689706	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2797995	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2797996	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2797997	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2797998	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2797999	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2798000	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2995681	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4545470	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58446977	0.85[AMR][1000 genomes]
rs58573736	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7908334	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95929000-95954200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:95929200-95966800	Weak transcription	Pancreas	Pancrea
3	chr10:95931600-95953000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:95931800-95952600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:95932000-95953000	Weak transcription	Colonic Mucosa	Colon
6	chr10:95932600-95968000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:95932800-95954200	Weak transcription	Fetal Brain Female	brain
8	chr10:95933000-95953000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:95933000-95954200	Weak transcription	Right Atrium	heart
10	chr10:95933000-95972600	Weak transcription	Fetal Intestine Large	intestine
11	chr10:95939200-95952800	Weak transcription	Ovary	ovary
12	chr10:95940600-95952800	Weak transcription	Fetal Lung	lung
13	chr10:95941200-95979800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr10:95943400-95973800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr10:95943800-95952800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr10:95944000-95952600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:95944000-95952600	Weak transcription	A549	lung
18	chr10:95944000-95952600	Weak transcription	NH-A	brain
19	chr10:95944200-95959800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr10:95944400-95952600	Weak transcription	Fetal Muscle Leg	muscle
21	chr10:95945000-95952800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:95947400-95952800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr10:95947600-95952400	Weak transcription	Aorta	Aorta
24	chr10:95948400-95952800	Weak transcription	Fetal Stomach	stomach
25	chr10:95948600-95954000	Weak transcription	Fetal Intestine Small	intestine

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