Variant report

Variant	rs2798000
Chromosome Location	chr10:95962791-95962792
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10748621	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748622	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786154	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786155	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10882403	0.81[AMR][1000 genomes]
rs11187811	0.83[AMR][1000 genomes]
rs12354980	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17093867	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2689693	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2689698	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2689706	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2797995	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2797996	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2797997	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2797998	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2797999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2995681	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4545470	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58446977	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58573736	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95929200-95966800	Weak transcription	Pancreas	Pancrea
2	chr10:95932600-95968000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:95933000-95972600	Weak transcription	Fetal Intestine Large	intestine
4	chr10:95941200-95979800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:95943400-95973800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:95953600-95965600	Weak transcription	Fetal Kidney	kidney
7	chr10:95953800-95965000	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:95955200-95965400	Weak transcription	Aorta	Aorta
9	chr10:95956200-95965200	Weak transcription	Colon Smooth Muscle	Colon
10	chr10:95957200-95965200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:95959600-95972400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:95959800-95965000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr10:95959800-95970600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:95959800-95972800	Weak transcription	A549	lung
15	chr10:95960000-95991800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr10:95960200-95965200	Weak transcription	Osteobl	bone
17	chr10:95960200-95965800	Weak transcription	Fetal Intestine Small	intestine
18	chr10:95960600-95970200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr10:95960800-95970800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:95962400-95965000	Weak transcription	Fetal Stomach	stomach
21	chr10:95962400-95965400	Weak transcription	Adipose Nuclei	Adipose
22	chr10:95962400-95966800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr10:95962600-95964600	Weak transcription	Fetal Lung	lung
24	chr10:95962600-95964800	Weak transcription	Stomach Smooth Muscle	stomach
25	chr10:95962600-95966000	Weak transcription	Right Ventricle	heart
26	chr10:95962600-95973600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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