Variant report

Variant	rs58446977
Chromosome Location	chr10:95954756-95954757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95949567..95952050-chr10:95954535..95957400,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10748621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786154	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786155	0.80[AMR][1000 genomes]
rs10882403	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11187811	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12354980	0.85[AMR][1000 genomes]
rs17093867	0.82[AMR][1000 genomes]
rs2689693	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2689698	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2689706	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2797995	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2797996	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2797997	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2797998	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2797999	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2798000	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2995681	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4545470	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58573736	0.82[AMR][1000 genomes]
rs7908334	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95929200-95966800	Weak transcription	Pancreas	Pancrea
2	chr10:95932600-95968000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:95933000-95972600	Weak transcription	Fetal Intestine Large	intestine
4	chr10:95941200-95979800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:95943400-95973800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:95944200-95959800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:95952600-95956000	Enhancers	Rectal Smooth Muscle	rectum
8	chr10:95952800-95956400	Enhancers	Fetal Stomach	stomach
9	chr10:95953000-95954800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:95953000-95955000	Enhancers	Colon Smooth Muscle	Colon
11	chr10:95953200-95960400	Weak transcription	Small Intestine	intestine
12	chr10:95953600-95954800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:95953600-95955600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:95953600-95965600	Weak transcription	Fetal Kidney	kidney
15	chr10:95953800-95965000	Weak transcription	Fetal Muscle Leg	muscle
16	chr10:95954200-95954800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr10:95954200-95954800	Enhancers	Osteobl	bone
18	chr10:95954200-95955000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr10:95954200-95955200	Enhancers	Stomach Mucosa	stomach
20	chr10:95954200-95961600	Weak transcription	Fetal Lung	lung
21	chr10:95954400-95955600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr10:95954400-95958600	Weak transcription	Fetal Intestine Small	intestine
23	chr10:95954400-95959000	Weak transcription	NH-A	brain
24	chr10:95954400-95959600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr10:95954600-95955000	Weak transcription	Aorta	Aorta
26	chr10:95954600-95958200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:95954600-95958400	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr10:95954600-95958400	Weak transcription	A549	lung

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