Variant report

Variant	rs4545470
Chromosome Location	chr10:95958331-95958332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10748621	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10748622	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10786154	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10786155	0.90[GIH][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10882403	0.82[AMR][1000 genomes]
rs12354980	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17093867	0.90[GIH][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2689693	0.88[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2689698	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2689706	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2797995	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2797996	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2797997	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2797998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2797999	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2798000	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2995681	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58446977	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58573736	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7908334	0.81[GIH][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95929200-95966800	Weak transcription	Pancreas	Pancrea
2	chr10:95932600-95968000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:95933000-95972600	Weak transcription	Fetal Intestine Large	intestine
4	chr10:95941200-95979800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:95943400-95973800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:95944200-95959800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:95953200-95960400	Weak transcription	Small Intestine	intestine
8	chr10:95953600-95965600	Weak transcription	Fetal Kidney	kidney
9	chr10:95953800-95965000	Weak transcription	Fetal Muscle Leg	muscle
10	chr10:95954200-95961600	Weak transcription	Fetal Lung	lung
11	chr10:95954400-95958600	Weak transcription	Fetal Intestine Small	intestine
12	chr10:95954400-95959000	Weak transcription	NH-A	brain
13	chr10:95954400-95959600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr10:95954600-95958400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr10:95954600-95958400	Weak transcription	A549	lung
16	chr10:95954800-95958800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr10:95954800-95959000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:95954800-95959000	Weak transcription	Osteobl	bone
19	chr10:95955200-95965400	Weak transcription	Aorta	Aorta
20	chr10:95955600-95959000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:95956200-95965200	Weak transcription	Colon Smooth Muscle	Colon
22	chr10:95956400-95962000	Weak transcription	Fetal Stomach	stomach
23	chr10:95957200-95965200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:95958200-95959800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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