Variant report

Variant	rs17093867
Chromosome Location	chr10:95952934-95952935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10748621	0.82[AMR][1000 genomes]
rs10748622	0.82[AMR][1000 genomes]
rs10786154	0.82[AMR][1000 genomes]
rs10786155	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882403	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11187811	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12354980	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2689693	0.89[MEX][hapmap];0.90[TSI][hapmap]
rs2689698	0.90[GIH][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes]
rs2689706	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2797995	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2797996	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2797997	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2797998	0.90[GIH][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2797999	0.90[GIH][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2798000	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2995681	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4545470	0.90[GIH][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58446977	0.82[AMR][1000 genomes]
rs58573736	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908334	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95929000-95954200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:95929200-95966800	Weak transcription	Pancreas	Pancrea
3	chr10:95931600-95953000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:95932000-95953000	Weak transcription	Colonic Mucosa	Colon
5	chr10:95932600-95968000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:95932800-95954200	Weak transcription	Fetal Brain Female	brain
7	chr10:95933000-95953000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:95933000-95954200	Weak transcription	Right Atrium	heart
9	chr10:95933000-95972600	Weak transcription	Fetal Intestine Large	intestine
10	chr10:95941200-95979800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr10:95943400-95973800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr10:95944200-95959800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr10:95948600-95954000	Weak transcription	Fetal Intestine Small	intestine
14	chr10:95952400-95953000	Enhancers	Aorta	Aorta
15	chr10:95952400-95953000	Enhancers	Osteobl	bone
16	chr10:95952600-95953000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:95952600-95953000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:95952600-95953000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr10:95952600-95953800	Enhancers	Fetal Muscle Leg	muscle
20	chr10:95952600-95954600	Enhancers	A549	lung
21	chr10:95952600-95954600	Enhancers	NHLF	lung
22	chr10:95952600-95956000	Enhancers	Rectal Smooth Muscle	rectum
23	chr10:95952800-95953000	Weak transcription	Small Intestine	intestine
24	chr10:95952800-95953200	Flanking Active TSS	NH-A	brain
25	chr10:95952800-95953600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:95952800-95953800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr10:95952800-95954000	Enhancers	Fetal Brain Male	brain
28	chr10:95952800-95954200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr10:95952800-95954200	Enhancers	Fetal Lung	lung
30	chr10:95952800-95954200	Enhancers	HSMMtube	muscle
31	chr10:95952800-95954400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr10:95952800-95954400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr10:95952800-95954400	Enhancers	Ovary	ovary
34	chr10:95952800-95954400	Enhancers	HSMM	muscle
35	chr10:95952800-95954600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr10:95952800-95954600	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr10:95952800-95956400	Enhancers	Fetal Stomach	stomach

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