Variant report

Variant	rs2689693
Chromosome Location	chr10:95965722-95965723
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10748621	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10748622	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10786154	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10786155	0.89[MEX][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes]
rs10882403	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11187811	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12354980	0.81[AMR][1000 genomes]
rs17093867	0.89[MEX][hapmap];0.90[TSI][hapmap]
rs2689698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2689706	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2797995	0.87[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2797996	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2797997	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2797998	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2797999	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2798000	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2995681	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4545470	0.88[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58446977	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7908334	0.90[GIH][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95929200-95966800	Weak transcription	Pancreas	Pancrea
2	chr10:95932600-95968000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:95933000-95972600	Weak transcription	Fetal Intestine Large	intestine
4	chr10:95941200-95979800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:95943400-95973800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:95959600-95972400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:95959800-95970600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:95959800-95972800	Weak transcription	A549	lung
9	chr10:95960000-95991800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr10:95960200-95965800	Weak transcription	Fetal Intestine Small	intestine
11	chr10:95960600-95970200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr10:95960800-95970800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:95962400-95966800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:95962600-95966000	Weak transcription	Right Ventricle	heart
15	chr10:95962600-95973600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr10:95964600-95967000	Enhancers	Fetal Lung	lung
17	chr10:95964600-95967000	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr10:95964800-95965800	Enhancers	Stomach Smooth Muscle	stomach
19	chr10:95964800-95966200	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr10:95964800-95967000	Enhancers	Liver	Liver
21	chr10:95965000-95966200	Enhancers	Fetal Muscle Leg	muscle
22	chr10:95965000-95966400	Enhancers	Fetal Stomach	stomach
23	chr10:95965200-95965800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:95965200-95965800	Enhancers	Colon Smooth Muscle	Colon
25	chr10:95965200-95967000	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr10:95965200-95972600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:95965400-95965800	Enhancers	Aorta	Aorta
28	chr10:95965400-95965800	Enhancers	Ovary	ovary
29	chr10:95965400-95966200	Active TSS	Fetal Brain Male	brain
30	chr10:95965400-95966400	Enhancers	Psoas Muscle	Psoas
31	chr10:95965400-95966600	Enhancers	Adipose Nuclei	Adipose
32	chr10:95965400-95966600	Enhancers	Stomach Mucosa	stomach
33	chr10:95965400-95967000	Enhancers	Lung	lung
34	chr10:95965400-95967000	Enhancers	Right Atrium	heart
35	chr10:95965400-95967000	Enhancers	Spleen	Spleen
36	chr10:95965600-95965800	Enhancers	Fetal Kidney	kidney
37	chr10:95965600-95966800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr10:95965600-95967200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr10:95965600-95969600	Weak transcription	HSMMtube	muscle

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