Variant report
| Variant | rs12418260 |
|---|---|
| Chromosome Location | chr11:17079136-17079137 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:17076833..17079491-chr11:17096981..17099134,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000201403 | Chromatin interaction |
| ENSG00000110700 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs11603461 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11604470 | 1.00[ASN][1000 genomes] |
| rs11604561 | 1.00[ASN][1000 genomes] |
| rs11605779 | 1.00[ASN][1000 genomes] |
| rs11827341 | 1.00[ASN][1000 genomes] |
| rs12417522 | 1.00[ASN][1000 genomes] |
| rs1544609 | 1.00[ASN][1000 genomes] |
| rs35297605 | 1.00[ASN][1000 genomes] |
| rs55763300 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55928651 | 1.00[ASN][1000 genomes] |
| rs56254605 | 1.00[ASN][1000 genomes] |
| rs59007596 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs59075718 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61762011 | 1.00[ASN][1000 genomes] |
| rs61879669 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61879670 | 1.00[ASN][1000 genomes] |
| rs61879673 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61879686 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61879698 | 1.00[ASN][1000 genomes] |
| rs61879699 | 1.00[ASN][1000 genomes] |
| rs61879703 | 1.00[ASN][1000 genomes] |
| rs61879714 | 1.00[ASN][1000 genomes] |
| rs61879715 | 1.00[ASN][1000 genomes] |
| rs61879721 | 1.00[ASN][1000 genomes] |
| rs61879731 | 1.00[ASN][1000 genomes] |
| rs61881312 | 1.00[ASN][1000 genomes] |
| rs72869096 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72870840 | 1.00[ASN][1000 genomes] |
| rs7481457 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv467711 | chr11:17027555-17320797 | Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 55 gene(s) | inside rSNPs | diseases |
| 2 | nsv553568 | chr11:17027555-17320797 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 55 gene(s) | inside rSNPs | diseases |
| 3 | nsv971988 | chr11:17068362-17084978 | Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:17069400-17096200 | Weak transcription | Pancreas | Pancrea |
| 2 | chr11:17070600-17088400 | Weak transcription | Fetal Intestine Small | intestine |
