Variant report
| Variant | rs12493277 |
|---|---|
| Chromosome Location | chr3:17915113-17915114 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs1019848 | 0.88[CHB][hapmap] |
| rs12489702 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12489764 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs13059889 | 0.94[ASN][1000 genomes] |
| rs13067311 | 0.88[ASN][1000 genomes] |
| rs13089217 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs13089390 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs13096605 | 0.94[ASN][1000 genomes] |
| rs13100478 | 1.00[JPT][hapmap] |
| rs34580836 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs34620069 | 0.85[ASN][1000 genomes] |
| rs34841152 | 1.00[AFR][1000 genomes] |
| rs35513271 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35596310 | 0.85[ASN][1000 genomes] |
| rs35995641 | 1.00[ASN][1000 genomes] |
| rs36078449 | 0.94[ASN][1000 genomes] |
| rs4909008 | 0.82[ASN][1000 genomes] |
| rs66910329 | 1.00[AFR][1000 genomes];0.85[ASN][1000 genomes] |
| rs67712814 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999594 | chr3:17690416-17982318 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:17904200-17936200 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
