Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17938846..17941461-chr3:17943244..17945275,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12489702	0.81[ASN][1000 genomes]
rs12489764	0.81[ASN][1000 genomes]
rs12493277	1.00[AFR][1000 genomes]
rs13059889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13067311	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13088161	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13089217	0.81[ASN][1000 genomes]
rs13089390	0.81[ASN][1000 genomes]
rs13092745	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13096605	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34432738	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34580836	0.83[ASN][1000 genomes]
rs34620069	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34763677	0.95[EUR][1000 genomes]
rs34891393	0.92[EUR][1000 genomes]
rs34990473	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35071338	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35458273	0.92[EUR][1000 genomes]
rs35513271	1.00[AFR][1000 genomes]
rs35596310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35995641	0.95[EUR][1000 genomes]
rs36078449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4908945	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66910329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67712814	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17936800-17950200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:17942800-17953800	Enhancers	Dnd41	blood
3	chr3:17943000-17944200	Enhancers	Primary B cells from peripheral blood	blood
4	chr3:17943000-17944200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr3:17943000-17944400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:17943000-17945600	Enhancers	Primary hematopoietic stem cells	blood
7	chr3:17943200-17944200	Enhancers	GM12878-XiMat	blood
8	chr3:17943200-17947400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr3:17943400-17947000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr3:17943600-17945600	Weak transcription	Fetal Heart	heart
11	chr3:17943800-17947600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr3:17944000-17944400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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