Variant report

Variant	rs36078449
Chromosome Location	chr3:17949197-17949198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17946551..17949256-chr3:17951273..17952887,2	MCF-7	breast:
2	chr3:17949151..17952704-chr3:17953108..17957303,4	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12489702	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12489764	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12493277	0.94[ASN][1000 genomes]
rs13059889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13067311	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13088161	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13089217	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs13089390	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs13092745	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13096605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34432738	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34580836	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs34620069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34763677	0.95[EUR][1000 genomes]
rs34841152	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34891393	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34990473	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35071338	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35458273	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35513271	0.94[ASN][1000 genomes]
rs35596310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35995641	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4908945	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4908949	0.81[ASN][1000 genomes]
rs4909008	0.88[ASN][1000 genomes]
rs66910329	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67712814	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17936800-17950200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:17942800-17953800	Enhancers	Dnd41	blood
3	chr3:17944800-17953600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:17946400-17953800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:17948200-17950200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:17948200-17952600	Weak transcription	Thymus	Thymus
7	chr3:17948600-17949800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:17948600-17950200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:17948600-17950200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr3:17948600-17951800	Enhancers	Fetal Thymus	thymus
11	chr3:17949000-17949600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood

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