Variant report

Variant	rs4908945
Chromosome Location	chr3:17980337-17980338
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:17973833..17976507-chr3:17978166..17980430,2	K562	blood:
2	chr3:17976315..17977947-chr3:17978585..17981053,2	MCF-7	breast:
3	chr3:17973590..17977236-chr3:17978166..17982549,4	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1019848	0.88[CHB][hapmap]
rs12489702	0.82[ASN][1000 genomes]
rs12489764	0.82[ASN][1000 genomes]
rs12493277	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13059889	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13067311	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13067391	1.00[AFR][1000 genomes]
rs13071249	1.00[AFR][1000 genomes]
rs13072195	1.00[AFR][1000 genomes]
rs13082583	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs13088161	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13089217	0.82[ASN][1000 genomes]
rs13089390	0.82[ASN][1000 genomes]
rs13092745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13096605	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13100478	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs34432738	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34495945	1.00[AFR][1000 genomes]
rs34580836	0.85[ASN][1000 genomes]
rs34598243	1.00[AFR][1000 genomes]
rs34620069	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34763677	0.92[EUR][1000 genomes]
rs34841152	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34891393	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34990473	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35071338	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35458273	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35596310	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35600741	1.00[AFR][1000 genomes]
rs35703302	1.00[AFR][1000 genomes]
rs35995641	0.87[EUR][1000 genomes]
rs36078449	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36093138	1.00[AFR][1000 genomes]
rs4688906	1.00[AFR][1000 genomes]
rs4908949	0.85[ASN][1000 genomes]
rs4909008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs66569729	1.00[AFR][1000 genomes]
rs66837099	1.00[AFR][1000 genomes]
rs66910329	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67712814	0.86[ASN][1000 genomes]
rs68000706	1.00[AFR][1000 genomes]
rs73030648	1.00[AFR][1000 genomes]
rs73042045	1.00[AFR][1000 genomes]
rs7375132	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17970200-17984400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:17975200-17980800	Enhancers	Fetal Heart	heart
3	chr3:17975600-17980600	Weak transcription	Dnd41	blood
4	chr3:17977600-17980800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:17978000-17981000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:17978200-17981200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:17978400-17981800	Enhancers	Primary hematopoietic stem cells	blood
8	chr3:17978400-17982600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:17978600-17983000	Enhancers	Fetal Thymus	thymus
10	chr3:17978800-17980600	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr3:17979000-17983000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr3:17979600-17980400	Enhancers	Thymus	Thymus
13	chr3:17979800-17980400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:17979800-17980400	Enhancers	Brain Hippocampus Middle	brain
15	chr3:17979800-17980400	Enhancers	Fetal Muscle Leg	muscle
16	chr3:17979800-17980600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:17979800-17982600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:17980000-17981600	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr3:17980200-17981200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr3:17980200-17981200	Enhancers	Monocytes-CD14+_RO01746	blood

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