Variant report

Variant	rs68000706
Chromosome Location	chr3:18009276-18009277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:27738112..27738749-chr3:18009014..18009800,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs13062364	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13067391	1.00[AFR][1000 genomes]
rs13071249	1.00[AFR][1000 genomes]
rs13072195	1.00[AFR][1000 genomes]
rs13073245	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13082583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13088044	0.81[AMR][1000 genomes]
rs13092745	1.00[AFR][1000 genomes]
rs13100478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34100396	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34253553	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34467492	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34495945	1.00[AFR][1000 genomes]
rs34598243	1.00[AFR][1000 genomes]
rs34683501	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34805505	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34879943	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35047986	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35048968	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs35119242	0.81[AMR][1000 genomes]
rs35525126	0.83[ASN][1000 genomes]
rs35600741	1.00[AFR][1000 genomes]
rs35703302	1.00[AFR][1000 genomes]
rs35965516	0.81[AMR][1000 genomes]
rs36093138	1.00[AFR][1000 genomes]
rs4688906	1.00[AFR][1000 genomes]
rs4908945	1.00[AFR][1000 genomes]
rs4908951	0.81[AMR][1000 genomes]
rs4908953	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4908997	0.83[ASN][1000 genomes]
rs4909002	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4909004	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4909006	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4909008	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs66569729	1.00[AFR][1000 genomes]
rs66837099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67279963	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs67552090	0.90[EUR][1000 genomes]
rs73030648	1.00[AFR][1000 genomes]
rs73042045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73043943	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7375132	1.00[AFR][1000 genomes]
rs7426391	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7433704	0.83[ASN][1000 genomes]
rs9838434	0.90[EUR][1000 genomes]
rs9838477	0.90[EUR][1000 genomes]
rs9875977	0.90[EUR][1000 genomes]
rs9876738	0.90[EUR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:18005200-18010000	Enhancers	Dnd41	blood
2	chr3:18006600-18009400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr3:18008600-18009800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:18008600-18010000	Enhancers	Adipose Nuclei	Adipose
5	chr3:18008600-18010000	Enhancers	Colon Smooth Muscle	Colon
6	chr3:18008800-18009800	Enhancers	Fetal Thymus	thymus
7	chr3:18008800-18009800	Enhancers	Thymus	Thymus
8	chr3:18009200-18009400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:18009200-18009600	Enhancers	Brain Angular Gyrus	brain
10	chr3:18009200-18009600	Enhancers	Brain Anterior Caudate	brain
11	chr3:18009200-18009600	Enhancers	Brain Cingulate Gyrus	brain
12	chr3:18009200-18009800	Enhancers	Brain Hippocampus Middle	brain
13	chr3:18009200-18010000	Enhancers	Brain Inferior Temporal Lobe	brain

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