Variant report

Variant	rs4909006
Chromosome Location	chr3:18017967-18017968
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:18017415..18021031-chr3:18035820..18038949,3	K562	blood:
2	chr3:18006324..18009213-chr3:18016966..18019722,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11922099	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13062364	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13073245	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13075905	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13076043	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13079656	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13080006	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13082583	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13088044	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13096272	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13100478	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34100396	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34253553	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34467492	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34500886	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34593250	0.83[ASN][1000 genomes]
rs34683501	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34805505	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34879943	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35047986	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35048968	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35119242	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35380191	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35413369	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs35525126	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35965516	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4908951	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4908953	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4908997	0.88[ASN][1000 genomes]
rs4909002	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4909004	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs66837099	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs66943997	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs67051048	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs67130673	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67279963	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67552090	0.83[ASN][1000 genomes]
rs68000706	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73042045	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73043943	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7375132	0.80[ASN][1000 genomes]
rs7426391	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7427336	0.83[ASN][1000 genomes]
rs7429971	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7433704	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9310541	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9838434	0.83[ASN][1000 genomes]
rs9875977	0.83[ASN][1000 genomes]
rs9876738	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1807571	chr3:18017246-18057347	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:18009800-18019000	Weak transcription	Fetal Thymus	thymus
2	chr3:18014000-18021600	Enhancers	Dnd41	blood
3	chr3:18014400-18021400	Weak transcription	Thymus	Thymus
4	chr3:18014600-18019800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:18015200-18020200	Weak transcription	Fetal Stomach	stomach
6	chr3:18015400-18022600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr3:18015600-18021000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:18015800-18018200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:18016800-18018400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr3:18016800-18022000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:18017200-18021000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:18017200-18021800	Enhancers	Colon Smooth Muscle	Colon
13	chr3:18017400-18018400	Enhancers	Primary hematopoietic stem cells	blood

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