Variant report

Variant	rs13075905
Chromosome Location	chr3:18110206-18110207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11922099	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12493277	1.00[JPT][hapmap]
rs13062364	0.90[ASN][1000 genomes]
rs13073245	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13076043	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13079656	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13080006	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13082583	0.89[ASN][1000 genomes]
rs13088044	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13092967	0.83[ASN][1000 genomes]
rs13096272	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13100478	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs34100396	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34253553	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34467492	0.90[ASN][1000 genomes]
rs34500886	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34593250	0.85[ASN][1000 genomes]
rs34683501	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34706490	0.83[ASN][1000 genomes]
rs34805505	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34879943	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35047986	0.89[ASN][1000 genomes]
rs35048968	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35119242	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35380191	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35413369	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs35525126	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35965516	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4908951	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4908953	0.87[ASN][1000 genomes]
rs4908997	0.90[ASN][1000 genomes]
rs4909002	0.87[ASN][1000 genomes]
rs4909004	0.89[ASN][1000 genomes]
rs4909006	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66837099	0.87[ASN][1000 genomes]
rs66943997	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67051048	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67130673	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67279963	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67552090	0.94[ASN][1000 genomes]
rs6794553	0.86[ASN][1000 genomes]
rs73043943	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7375132	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7426391	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7427336	0.95[ASN][1000 genomes]
rs7429971	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7433704	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9310541	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9838434	0.94[ASN][1000 genomes]
rs9838477	0.89[ASN][1000 genomes]
rs9849870	0.97[ASN][1000 genomes]
rs9875977	0.94[ASN][1000 genomes]
rs9876738	0.94[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:18086800-18113400	Weak transcription	Fetal Thymus	thymus
2	chr3:18102200-18127200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:18105000-18110600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr3:18105400-18112000	Weak transcription	Dnd41	blood
5	chr3:18105600-18114000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:18105600-18117800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr3:18106200-18118800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr3:18106400-18110800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:18106400-18111400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:18106400-18111400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:18108600-18111000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:18109400-18110800	Weak transcription	HMEC	breast
13	chr3:18109600-18111000	Weak transcription	NHEK	skin
14	chr3:18109600-18121200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:18109800-18117400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:18109800-18118600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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