Variant report

Variant	rs4909004
Chromosome Location	chr3:18033536-18033537
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:18033298..18036724-chr3:18038153..18042609,4	K562	blood:
2	chr3:18032310..18035084-chr3:18071634..18073958,2	K562	blood:
3	chr3:18026849..18028715-chr3:18032122..18033641,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11922099	0.92[ASN][1000 genomes]
rs13062364	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13073245	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13075905	0.89[ASN][1000 genomes]
rs13076043	0.89[ASN][1000 genomes]
rs13079656	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13080006	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13082583	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13088044	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13096272	0.92[ASN][1000 genomes]
rs13100478	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34100396	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34253553	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34432738	1.00[AFR][1000 genomes]
rs34467492	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34500886	0.92[ASN][1000 genomes]
rs34593250	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34683501	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs34763677	1.00[AFR][1000 genomes]
rs34805505	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34879943	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34990473	1.00[AFR][1000 genomes]
rs35047986	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35048968	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35071338	1.00[AFR][1000 genomes]
rs35119242	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs35380191	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35413369	0.92[ASN][1000 genomes]
rs35458273	1.00[AFR][1000 genomes]
rs35525126	0.90[ASN][1000 genomes]
rs35965516	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4908951	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4908953	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4908997	0.90[ASN][1000 genomes]
rs4909002	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4909006	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs66837099	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs66943997	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67051048	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67130673	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67279963	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs67552090	0.95[ASN][1000 genomes]
rs68000706	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73042045	0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs73043943	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7375132	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7426391	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7427336	0.95[ASN][1000 genomes]
rs7429971	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7433704	0.90[ASN][1000 genomes]
rs9310541	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9838434	0.95[ASN][1000 genomes]
rs9838477	0.90[ASN][1000 genomes]
rs9849870	0.87[ASN][1000 genomes]
rs9875977	0.95[ASN][1000 genomes]
rs9876738	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1807571	chr3:18017246-18057347	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:18029600-18035800	Weak transcription	Fetal Thymus	thymus
2	chr3:18029600-18037400	Weak transcription	Thymus	Thymus
3	chr3:18029800-18035000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr3:18032800-18036000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:18033000-18034200	Enhancers	Dnd41	blood

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