Variant report

Variant	rs34990473
Chromosome Location	chr3:17987582-17987583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12493277	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap]
rs13059889	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13062364	1.00[AFR][1000 genomes]
rs13067311	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13082583	1.00[CEU][hapmap]
rs13088161	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13092745	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13096605	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13100478	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs34432738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34467492	1.00[AFR][1000 genomes]
rs34580836	0.80[ASN][1000 genomes]
rs34620069	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34763677	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs34841152	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34891393	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35071338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35458273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35596310	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35995641	0.92[EUR][1000 genomes]
rs36078449	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4908945	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4908949	0.86[ASN][1000 genomes]
rs4908953	1.00[AFR][1000 genomes]
rs4909002	1.00[AFR][1000 genomes]
rs4909004	1.00[AFR][1000 genomes]
rs4909008	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66910329	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67712814	0.81[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17980400-17987600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:17986000-17989600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:17986000-17989600	Enhancers	Dnd41	blood
4	chr3:17986200-17989000	Enhancers	Fetal Heart	heart
5	chr3:17986400-17989000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr3:17986400-17990600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:17986400-17991400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:17986600-17987600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:17986600-17987800	Enhancers	HSMMtube	muscle
10	chr3:17986600-17988400	Enhancers	Fetal Thymus	thymus
11	chr3:17986600-17989400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:17986600-17989400	Enhancers	Thymus	Thymus
13	chr3:17986600-17991400	Enhancers	Primary hematopoietic stem cells	blood
14	chr3:17986800-17987600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:17986800-17987600	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr3:17986800-17987600	Enhancers	NHEK	skin
17	chr3:17986800-17987800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr3:17986800-17987800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr3:17986800-17987800	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr3:17987000-17987600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:17987200-17987600	Enhancers	H1 Cell Line	embryonic stem cell
22	chr3:17987200-17987600	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr3:17987200-17987800	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr3:17987200-17987800	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr3:17987200-17987800	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr3:17987200-17988000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr3:17987200-17988200	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr3:17987200-17988200	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr3:17987400-17987600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr3:17987400-17988400	Enhancers	K562	blood

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