Variant report

Variant	rs13092745
Chromosome Location	chr3:17982499-17982500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:17982462..17982982-chr3:17990750..17991532,2	MCF-7	breast:
2	chr3:17973590..17977236-chr3:17978166..17982549,4	K562	blood:
3	chr3:17982350..17982926-chr3:18159540..18160407,2	MCF-7	breast:
4	chr3:17982287..17984361-chr3:18116779..18119746,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1019848	0.88[CHB][hapmap]
rs12489702	0.82[ASN][1000 genomes]
rs12489764	0.82[ASN][1000 genomes]
rs12493277	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13059889	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13067311	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13067391	1.00[AFR][1000 genomes]
rs13071249	1.00[AFR][1000 genomes]
rs13072195	1.00[AFR][1000 genomes]
rs13082583	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs13088161	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13089217	0.82[ASN][1000 genomes]
rs13089390	0.82[ASN][1000 genomes]
rs13096605	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13100478	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs34432738	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34495945	1.00[AFR][1000 genomes]
rs34580836	0.85[ASN][1000 genomes]
rs34598243	1.00[AFR][1000 genomes]
rs34620069	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34763677	0.92[EUR][1000 genomes]
rs34841152	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34891393	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34990473	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35071338	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35458273	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35596310	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35600741	1.00[AFR][1000 genomes]
rs35703302	1.00[AFR][1000 genomes]
rs35995641	0.87[EUR][1000 genomes]
rs36078449	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36093138	1.00[AFR][1000 genomes]
rs4688906	1.00[AFR][1000 genomes]
rs4908945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908949	0.85[ASN][1000 genomes]
rs4909008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs66569729	1.00[AFR][1000 genomes]
rs66837099	1.00[AFR][1000 genomes]
rs66910329	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67712814	0.86[ASN][1000 genomes]
rs68000706	1.00[AFR][1000 genomes]
rs73030648	1.00[AFR][1000 genomes]
rs73042045	1.00[AFR][1000 genomes]
rs7375132	1.00[AFR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17970200-17984400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:17978400-17982600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:17978600-17983000	Enhancers	Fetal Thymus	thymus
4	chr3:17979000-17983000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:17979800-17982600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:17980400-17982600	Weak transcription	Thymus	Thymus
7	chr3:17980400-17987600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:17981200-17983000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr3:17981200-17983400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:17981200-17983400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:17981400-17986200	Weak transcription	Fetal Heart	heart
12	chr3:17981600-17982800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:17981800-17986000	Weak transcription	Dnd41	blood
14	chr3:17981800-17986600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr3:17982200-17986400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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