Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17783374..17785307-chr3:17890721..17892638,2	K562	blood:

Variant related genes	Relation type
ENSG00000131374	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12489702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12489764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12493277	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13059889	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs13067311	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs13088161	0.80[ASN][1000 genomes]
rs13089217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13089390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13092745	0.85[ASN][1000 genomes]
rs13096605	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs34432738	0.80[ASN][1000 genomes]
rs34620069	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs34841152	0.83[ASN][1000 genomes]
rs34990473	0.80[ASN][1000 genomes]
rs35071338	0.80[ASN][1000 genomes]
rs35513271	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35596310	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs35995641	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs36078449	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4908945	0.85[ASN][1000 genomes]
rs4909008	0.82[ASN][1000 genomes]
rs66910329	0.91[ASN][1000 genomes]
rs67712814	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17891200-17892600	Enhancers	Placenta	Placenta
2	chr3:17891800-17892800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:17891800-17893200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:17892000-17892600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr3:17892200-17892800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

Quick Search: