Variant report

Variant	rs4909002
Chromosome Location	chr3:18054343-18054344
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11922099	0.90[ASN][1000 genomes]
rs12493277	1.00[JPT][hapmap];1.00[MKK][hapmap]
rs13062364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13073245	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13075905	0.87[ASN][1000 genomes]
rs13076043	0.87[ASN][1000 genomes]
rs13079656	0.90[ASN][1000 genomes]
rs13080006	0.90[ASN][1000 genomes]
rs13082583	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13088044	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13096272	0.90[ASN][1000 genomes]
rs13100478	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34100396	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34253553	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34432738	1.00[AFR][1000 genomes]
rs34467492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34500886	0.90[ASN][1000 genomes]
rs34593250	0.93[ASN][1000 genomes]
rs34683501	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34763677	1.00[AFR][1000 genomes]
rs34805505	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34879943	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34990473	1.00[AFR][1000 genomes]
rs35047986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35048968	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35071338	1.00[AFR][1000 genomes]
rs35119242	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs35380191	0.87[ASN][1000 genomes]
rs35413369	0.90[ASN][1000 genomes]
rs35458273	1.00[AFR][1000 genomes]
rs35525126	0.97[ASN][1000 genomes]
rs35965516	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4908951	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4908953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908997	0.97[ASN][1000 genomes]
rs4909004	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4909006	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs66837099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66943997	0.90[ASN][1000 genomes]
rs67051048	0.90[ASN][1000 genomes]
rs67130673	0.92[ASN][1000 genomes]
rs67279963	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs67552090	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs68000706	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73042045	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73043943	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7375132	0.90[ASN][1000 genomes]
rs7426391	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7427336	0.92[ASN][1000 genomes]
rs7429971	0.92[ASN][1000 genomes]
rs7433704	0.97[ASN][1000 genomes]
rs9310541	0.90[ASN][1000 genomes]
rs9838434	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9838477	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9849870	0.84[ASN][1000 genomes]
rs9875977	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9876738	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1807571	chr3:18017246-18057347	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:18046200-18076600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:18049400-18056200	Enhancers	Dnd41	blood
3	chr3:18049800-18055000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:18050400-18055000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:18051600-18055600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:18052000-18055000	Enhancers	Fetal Thymus	thymus
7	chr3:18053800-18054600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:18053800-18054800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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