The 2.0 version of rSNPBase

Variant report

Variant rs12498653
Chromosome Location chr4:87606016-87606017
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:87574600-87644400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
2 chr4:87579200-87642600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
3 chr4:87579400-87644400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
4 chr4:87579600-87611800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr4:87585200-87618000 Weak transcription Pancreatic Islets Pancreatic Islet
6 chr4:87586400-87643200 Weak transcription iPS-18 Cell Line embryonic stem cell
7 chr4:87591800-87639000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
8 chr4:87591800-87641000 Weak transcription Brain Anterior Caudate brain
9 chr4:87592200-87606600 Weak transcription A549 lung
10 chr4:87592200-87606600 Weak transcription NHLF lung
11 chr4:87592400-87627800 Weak transcription HMEC breast
12 chr4:87592400-87656400 Weak transcription Adipose Nuclei Adipose
13 chr4:87592600-87620600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
14 chr4:87592800-87606200 Weak transcription Brain Hippocampus Middle brain
15 chr4:87593400-87606600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr4:87593800-87641400 Weak transcription Brain Angular Gyrus brain
17 chr4:87594400-87606200 Weak transcription Cortex derived primary cultured neurospheres brain
18 chr4:87594400-87606400 Weak transcription Esophagus oesophagus
19 chr4:87594400-87610400 Weak transcription iPS-20b Cell Line embryonic stem cell
20 chr4:87594400-87642600 Weak transcription HUES6 Cell Line embryonic stem cell
21 chr4:87594400-87659800 Weak transcription Ovary ovary
22 chr4:87594600-87610200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr4:87594600-87610200 Weak transcription Fetal Lung lung
24 chr4:87594800-87606800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr4:87594800-87622400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
26 chr4:87594800-87639200 Weak transcription Fetal Kidney kidney
27 chr4:87595000-87610600 Weak transcription NHDF-Ad bronchial
28 chr4:87595200-87610200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr4:87595200-87638200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
30 chr4:87595200-87651200 Weak transcription Fetal Stomach stomach
31 chr4:87595400-87622800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
32 chr4:87597800-87610200 Weak transcription HUES64 Cell Line embryonic stem cell
33 chr4:87599000-87609400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
34 chr4:87600400-87610000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
35 chr4:87600400-87639200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
36 chr4:87600800-87606400 Weak transcription NHEK skin
37 chr4:87601400-87610000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr4:87601400-87610600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr4:87601800-87615000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
40 chr4:87603600-87615200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
41 chr4:87604200-87622200 Weak transcription Fetal Brain Male brain
42 chr4:87604600-87606400 Weak transcription Brain Substantia Nigra brain
43 chr4:87604800-87638200 Weak transcription Breast Myoepithelial Primary Cells Breast
44 chr4:87605000-87624800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr4:87605400-87609000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr4:87605600-87610800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr4:87606000-87606200 Weak transcription ES-I3 Cell Line embryonic stem cell
48 chr4:87606000-87606800 Enhancers HUES48 Cell Line embryonic stem cell
49 chr4:87606000-87606800 Enhancers Hela-S3 cervix

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Last update: Aug 31, 2015