The 2.0 version of rSNPBase

Variant report

Variant rs12509049
Chromosome Location chr4:87555747-87555748
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:87540400-87556200 Weak transcription H1 Cell Line embryonic stem cell
2 chr4:87541200-87571200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
3 chr4:87541600-87556200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr4:87542800-87557600 Weak transcription Brain Anterior Caudate brain
5 chr4:87542800-87566400 Weak transcription iPS-18 Cell Line embryonic stem cell
6 chr4:87543200-87556400 Weak transcription Cortex derived primary cultured neurospheres brain
7 chr4:87544200-87556000 Weak transcription HUES64 Cell Line embryonic stem cell
8 chr4:87544400-87556800 Weak transcription Brain Cingulate Gyrus brain
9 chr4:87544400-87571200 Weak transcription Pancreas Pancrea
10 chr4:87546200-87569400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
11 chr4:87546400-87556400 Weak transcription iPS-20b Cell Line embryonic stem cell
12 chr4:87546400-87557000 Weak transcription HUES48 Cell Line embryonic stem cell
13 chr4:87547000-87556200 Weak transcription HUES6 Cell Line embryonic stem cell
14 chr4:87551000-87556200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
15 chr4:87551400-87556800 Weak transcription Breast Myoepithelial Primary Cells Breast
16 chr4:87552200-87556400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
17 chr4:87552400-87556000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
18 chr4:87552600-87556800 Weak transcription Brain Hippocampus Middle brain
19 chr4:87552800-87557800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr4:87553000-87556000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
21 chr4:87553400-87557800 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr4:87553600-87556400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr4:87554600-87556000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
24 chr4:87554600-87556000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
25 chr4:87554600-87556000 Weak transcription Ovary ovary
26 chr4:87554600-87556200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
27 chr4:87554600-87557000 Weak transcription HMEC breast
28 chr4:87554600-87558800 Weak transcription Lung lung
29 chr4:87554600-87567000 Weak transcription Osteobl bone
30 chr4:87554600-87567400 Weak transcription Esophagus oesophagus
31 chr4:87554800-87555800 Weak transcription Primary hematopoietic stem cells short term culture blood
32 chr4:87554800-87555800 Weak transcription NHEK skin
33 chr4:87554800-87556000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
34 chr4:87554800-87556000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr4:87554800-87566000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
36 chr4:87555000-87557200 Weak transcription Brain Substantia Nigra brain
37 chr4:87555000-87558800 Weak transcription Brain Germinal Matrix brain
38 chr4:87555200-87556200 Enhancers Primary T helper 17 cells PMA-I stimulated --
39 chr4:87555200-87556800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
40 chr4:87555200-87559400 Weak transcription Duodenum Smooth Muscle Duodenum
41 chr4:87555400-87555800 Flanking Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
42 chr4:87555400-87556000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
43 chr4:87555400-87556200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr4:87555400-87556600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
45 chr4:87555400-87557000 Weak transcription Fetal Lung lung
46 chr4:87555400-87557200 Weak transcription Primary hematopoietic stem cells blood
47 chr4:87555600-87555800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
48 chr4:87555600-87555800 Weak transcription Fetal Kidney kidney
49 chr4:87555600-87557800 Strong transcription NHDF-Ad bronchial

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Last update: Aug 31, 2015