Variant report
Variant | rs7668637 |
---|---|
Chromosome Location | chr4:87575359-87575360 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr4:87574443..87576554-chr4:87578304..87580063,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10000891 | 1.00[ASN][1000 genomes] |
rs10001010 | 1.00[ASN][1000 genomes] |
rs10001986 | 1.00[ASN][1000 genomes] |
rs10002511 | 1.00[ASN][1000 genomes] |
rs10003989 | 1.00[ASN][1000 genomes] |
rs10009119 | 1.00[ASN][1000 genomes] |
rs10009309 | 1.00[ASN][1000 genomes] |
rs10009603 | 1.00[ASN][1000 genomes] |
rs10009758 | 1.00[ASN][1000 genomes] |
rs10009789 | 1.00[ASN][1000 genomes] |
rs10013048 | 1.00[ASN][1000 genomes] |
rs10013114 | 1.00[ASN][1000 genomes] |
rs10013988 | 1.00[ASN][1000 genomes] |
rs10016082 | 1.00[ASN][1000 genomes] |
rs10016120 | 1.00[ASN][1000 genomes] |
rs10016124 | 1.00[ASN][1000 genomes] |
rs10020590 | 1.00[ASN][1000 genomes] |
rs10021168 | 1.00[ASN][1000 genomes] |
rs10023163 | 1.00[ASN][1000 genomes] |
rs10024496 | 1.00[ASN][1000 genomes] |
rs10024631 | 1.00[ASN][1000 genomes] |
rs10024860 | 1.00[ASN][1000 genomes] |
rs10025930 | 1.00[ASN][1000 genomes] |
rs10026645 | 1.00[ASN][1000 genomes] |
rs10028003 | 1.00[ASN][1000 genomes] |
rs10028357 | 1.00[ASN][1000 genomes] |
rs10028550 | 1.00[ASN][1000 genomes] |
rs10029055 | 1.00[ASN][1000 genomes] |
rs10029565 | 1.00[ASN][1000 genomes] |
rs10030981 | 1.00[ASN][1000 genomes] |
rs10032126 | 1.00[ASN][1000 genomes] |
rs10032979 | 1.00[ASN][1000 genomes] |
rs10033029 | 1.00[ASN][1000 genomes] |
rs10033679 | 1.00[ASN][1000 genomes] |
rs10084899 | 1.00[ASN][1000 genomes] |
rs10084902 | 1.00[ASN][1000 genomes] |
rs10084954 | 1.00[ASN][1000 genomes] |
rs10212681 | 1.00[ASN][1000 genomes] |
rs10212723 | 1.00[ASN][1000 genomes] |
rs10213021 | 1.00[ASN][1000 genomes] |
rs10213484 | 1.00[ASN][1000 genomes] |
rs10213632 | 1.00[ASN][1000 genomes] |
rs1038290 | 1.00[ASN][1000 genomes] |
rs10470883 | 1.00[ASN][1000 genomes] |
rs10470933 | 1.00[ASN][1000 genomes] |
rs10516780 | 1.00[ASN][1000 genomes] |
rs10516783 | 1.00[ASN][1000 genomes] |
rs10516784 | 1.00[ASN][1000 genomes] |
rs11097118 | 1.00[ASN][1000 genomes] |
rs11097119 | 1.00[ASN][1000 genomes] |
rs11097120 | 1.00[ASN][1000 genomes] |
rs12171330 | 1.00[ASN][1000 genomes] |
rs12171331 | 1.00[ASN][1000 genomes] |
rs12171388 | 1.00[ASN][1000 genomes] |
rs12171414 | 1.00[ASN][1000 genomes] |
rs12171415 | 1.00[ASN][1000 genomes] |
rs12171445 | 1.00[ASN][1000 genomes] |
rs12171459 | 1.00[ASN][1000 genomes] |
rs12171474 | 1.00[ASN][1000 genomes] |
rs12498653 | 1.00[ASN][1000 genomes] |
rs12499471 | 1.00[ASN][1000 genomes] |
rs12499477 | 1.00[ASN][1000 genomes] |
rs12499575 | 1.00[ASN][1000 genomes] |
rs12499984 | 1.00[ASN][1000 genomes] |
rs12499991 | 1.00[ASN][1000 genomes] |
rs12500797 | 1.00[ASN][1000 genomes] |
rs12502376 | 1.00[ASN][1000 genomes] |
rs12502645 | 1.00[ASN][1000 genomes] |
rs12505291 | 1.00[ASN][1000 genomes] |
rs12505402 | 1.00[ASN][1000 genomes] |
rs12507034 | 1.00[ASN][1000 genomes] |
rs12507163 | 1.00[ASN][1000 genomes] |
rs12508339 | 1.00[ASN][1000 genomes] |
rs12508626 | 1.00[ASN][1000 genomes] |
rs12508746 | 1.00[ASN][1000 genomes] |
rs12509039 | 1.00[ASN][1000 genomes] |
rs12509049 | 1.00[ASN][1000 genomes] |
rs12509560 | 1.00[ASN][1000 genomes] |
rs12510393 | 1.00[ASN][1000 genomes] |
rs12511153 | 1.00[ASN][1000 genomes] |
rs12511318 | 1.00[ASN][1000 genomes] |
rs12512858 | 1.00[ASN][1000 genomes] |
rs12710827 | 1.00[ASN][1000 genomes] |
rs13108514 | 1.00[ASN][1000 genomes] |
rs13108571 | 1.00[ASN][1000 genomes] |
rs13108581 | 1.00[ASN][1000 genomes] |
rs13108735 | 1.00[ASN][1000 genomes] |
rs13109164 | 1.00[ASN][1000 genomes] |
rs13111757 | 1.00[ASN][1000 genomes] |
rs13112139 | 1.00[ASN][1000 genomes] |
rs13112150 | 1.00[ASN][1000 genomes] |
rs13115122 | 1.00[ASN][1000 genomes] |
rs13115681 | 1.00[ASN][1000 genomes] |
rs13117481 | 1.00[ASN][1000 genomes] |
rs13118632 | 1.00[ASN][1000 genomes] |
rs13120724 | 1.00[ASN][1000 genomes] |
rs13131069 | 1.00[ASN][1000 genomes] |
rs13135528 | 1.00[ASN][1000 genomes] |
rs13136201 | 1.00[ASN][1000 genomes] |
rs13136651 | 1.00[ASN][1000 genomes] |
rs13148078 | 1.00[ASN][1000 genomes] |
rs13148807 | 1.00[ASN][1000 genomes] |
rs13150561 | 1.00[ASN][1000 genomes] |
rs13152382 | 1.00[ASN][1000 genomes] |
rs1420620 | 1.00[ASN][1000 genomes] |
rs17454432 | 1.00[ASN][1000 genomes] |
rs17454655 | 1.00[ASN][1000 genomes] |
rs28411302 | 1.00[ASN][1000 genomes] |
rs28416315 | 1.00[ASN][1000 genomes] |
rs28421178 | 1.00[ASN][1000 genomes] |
rs28441099 | 1.00[ASN][1000 genomes] |
rs28448567 | 1.00[ASN][1000 genomes] |
rs28483600 | 1.00[ASN][1000 genomes] |
rs28491390 | 1.00[ASN][1000 genomes] |
rs28502328 | 1.00[ASN][1000 genomes] |
rs28535818 | 1.00[ASN][1000 genomes] |
rs28545322 | 1.00[ASN][1000 genomes] |
rs28548225 | 1.00[ASN][1000 genomes] |
rs28570548 | 1.00[ASN][1000 genomes] |
rs28572183 | 1.00[ASN][1000 genomes] |
rs28572787 | 1.00[ASN][1000 genomes] |
rs28578632 | 1.00[ASN][1000 genomes] |
rs28587332 | 1.00[ASN][1000 genomes] |
rs28610135 | 1.00[ASN][1000 genomes] |
rs28619493 | 1.00[ASN][1000 genomes] |
rs28623441 | 1.00[ASN][1000 genomes] |
rs28634740 | 1.00[ASN][1000 genomes] |
rs28663463 | 1.00[ASN][1000 genomes] |
rs28682899 | 1.00[ASN][1000 genomes] |
rs28696860 | 1.00[ASN][1000 genomes] |
rs28710769 | 1.00[ASN][1000 genomes] |
rs28785508 | 1.00[ASN][1000 genomes] |
rs28785868 | 1.00[ASN][1000 genomes] |
rs28833029 | 1.00[ASN][1000 genomes] |
rs28846151 | 1.00[ASN][1000 genomes] |
rs28846800 | 1.00[ASN][1000 genomes] |
rs28868582 | 1.00[ASN][1000 genomes] |
rs28877076 | 1.00[ASN][1000 genomes] |
rs34178790 | 1.00[ASN][1000 genomes] |
rs34320168 | 1.00[ASN][1000 genomes] |
rs34371873 | 1.00[ASN][1000 genomes] |
rs35254293 | 1.00[ASN][1000 genomes] |
rs35355289 | 1.00[ASN][1000 genomes] |
rs35528563 | 1.00[ASN][1000 genomes] |
rs35982123 | 1.00[ASN][1000 genomes] |
rs66584788 | 1.00[ASN][1000 genomes] |
rs67067959 | 1.00[ASN][1000 genomes] |
rs6817630 | 1.00[ASN][1000 genomes] |
rs71605609 | 1.00[ASN][1000 genomes] |
rs71605610 | 1.00[ASN][1000 genomes] |
rs71605611 | 1.00[ASN][1000 genomes] |
rs71605613 | 1.00[ASN][1000 genomes] |
rs71605614 | 1.00[ASN][1000 genomes] |
rs71605615 | 1.00[ASN][1000 genomes] |
rs71605617 | 1.00[ASN][1000 genomes] |
rs71605618 | 1.00[ASN][1000 genomes] |
rs71633353 | 1.00[ASN][1000 genomes] |
rs7664147 | 1.00[ASN][1000 genomes] |
rs7698481 | 1.00[ASN][1000 genomes] |
rs7699564 | 1.00[ASN][1000 genomes] |
rs9307022 | 1.00[ASN][1000 genomes] |
rs9307023 | 1.00[ASN][1000 genomes] |
rs9307024 | 1.00[ASN][1000 genomes] |
rs9884784 | 1.00[ASN][1000 genomes] |
rs9990536 | 1.00[ASN][1000 genomes] |
rs9993492 | 1.00[ASN][1000 genomes] |
rs9993838 | 1.00[ASN][1000 genomes] |
rs9994213 | 1.00[ASN][1000 genomes] |
rs9994421 | 1.00[ASN][1000 genomes] |
rs9997453 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv594786 | chr4:87076360-87609320 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
2 | nsv594787 | chr4:87221827-87888667 | Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
3 | nsv1012836 | chr4:87279206-87643558 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
4 | esv2757071 | chr4:87417291-87689533 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
5 | esv2759264 | chr4:87417291-87689533 | Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
6 | nsv879522 | chr4:87473776-87644842 | Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
7 | nsv822635 | chr4:87479576-87622176 | Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
8 | nsv879523 | chr4:87517609-87594472 | Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
9 | nsv879524 | chr4:87517609-87603929 | Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
10 | esv2755470 | chr4:87536515-87613212 | Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:87566400-87578400 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
2 | chr4:87566600-87578600 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
3 | chr4:87571600-87578600 | Weak transcription | Esophagus | oesophagus |
4 | chr4:87571600-87596000 | Weak transcription | Pancreas | Pancrea |
5 | chr4:87574200-87579400 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
6 | chr4:87574600-87577400 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
7 | chr4:87574600-87578000 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
8 | chr4:87574600-87578400 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
9 | chr4:87574600-87583600 | Weak transcription | Ovary | ovary |
10 | chr4:87574600-87594000 | Weak transcription | Fetal Kidney | kidney |
11 | chr4:87574600-87604400 | Weak transcription | Brain Substantia Nigra | brain |
12 | chr4:87574600-87644400 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
13 | chr4:87574800-87578000 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
14 | chr4:87574800-87578000 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
15 | chr4:87574800-87578400 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
16 | chr4:87574800-87578600 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
17 | chr4:87574800-87582000 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
18 | chr4:87575200-87578600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
19 | chr4:87575200-87580800 | Weak transcription | Fetal Lung | lung |