Variant report

Variant	rs12503097
Chromosome Location	chr4:27097098-27097099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:27052472..27054140-chr4:27095815..27098654,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13108236	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13113425	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35241736	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35281978	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36084087	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4234985	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4501207	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4692163	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55833139	0.86[EUR][1000 genomes]
rs6844289	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs741130	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs741137	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs757632	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs759113	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7696691	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4279	chr4:27056372-27101774	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1002082	chr4:27078850-27377252	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv997608	chr4:27085524-27371848	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv436429	chr4:27096917-27103731	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27091000-27097400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:27091000-27104200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:27092000-27100800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:27095000-27097800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:27095000-27102800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:27095800-27098000	Enhancers	Pancreas	Pancrea
7	chr4:27096000-27097200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:27096000-27097200	Enhancers	Gastric	stomach
9	chr4:27096000-27099400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr4:27096200-27099400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr4:27096400-27097400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr4:27096400-27098000	Weak transcription	Fetal Muscle Leg	muscle
13	chr4:27096400-27099600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr4:27096400-27100000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr4:27096600-27097200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:27096600-27099600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr4:27096800-27097400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr4:27096800-27098000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr4:27096800-27098400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr4:27097000-27097400	Enhancers	Lung	lung
21	chr4:27097000-27097600	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr4:27097000-27099800	Enhancers	HUES6 Cell Line	embryonic stem cell

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