Variant report

Variant	rs741130
Chromosome Location	chr4:27100144-27100145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12503097	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13108236	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13113425	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35241736	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35281978	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36084087	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4234985	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4501207	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4692163	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55833139	0.87[EUR][1000 genomes]
rs6844289	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs741137	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs757632	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs759113	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7696691	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4279	chr4:27056372-27101774	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1002082	chr4:27078850-27377252	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv997608	chr4:27085524-27371848	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv436429	chr4:27096917-27103731	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27091000-27104200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:27092000-27100800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:27095000-27102800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:27097200-27102400	Weak transcription	Gastric	stomach
5	chr4:27097400-27102000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:27097800-27102400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr4:27098000-27102400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr4:27098800-27101800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:27099200-27102400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:27099200-27103000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr4:27099400-27103200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr4:27099600-27102200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr4:27099600-27102800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr4:27099800-27102400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr4:27100000-27102000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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