Variant report

Variant	rs4692163
Chromosome Location	chr4:27087570-27087571
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:27051955..27053915-chr4:27085693..27088631,2	K562	blood:
2	chr4:27080386..27082606-chr4:27086852..27089435,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12503097	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13108236	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13113425	0.89[EUR][1000 genomes]
rs35241736	0.87[EUR][1000 genomes]
rs35281978	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36084087	0.86[EUR][1000 genomes]
rs4501207	0.81[EUR][1000 genomes]
rs6844289	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs741130	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs741137	0.87[EUR][1000 genomes]
rs759113	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7696691	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4279	chr4:27056372-27101774	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1002082	chr4:27078850-27377252	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv997608	chr4:27085524-27371848	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27086800-27089400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:27086800-27089400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:27087000-27087600	Enhancers	H9 Cell Line	embryonic stem cell
4	chr4:27087000-27088000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:27087200-27087600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:27087200-27087600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:27087200-27087600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
8	chr4:27087200-27087600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
9	chr4:27087200-27087600	Enhancers	Brain Cingulate Gyrus	brain
10	chr4:27087200-27087600	Enhancers	Brain Germinal Matrix	brain
11	chr4:27087200-27087800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:27087200-27087800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
13	chr4:27087200-27087800	Bivalent Enhancer	Primary hematopoietic stem cells	blood
14	chr4:27087200-27088200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:27087200-27090000	Weak transcription	Brain Hippocampus Middle	brain
16	chr4:27087200-27092800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr4:27087400-27087600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
18	chr4:27087400-27087600	Enhancers	Fetal Brain Male	brain
19	chr4:27087400-27087600	Enhancers	Fetal Brain Female	brain
20	chr4:27087400-27087800	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr4:27087400-27087800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr4:27087400-27089000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr4:27087400-27091000	Weak transcription	Lung	lung
24	chr4:27087400-27095800	Weak transcription	Pancreas	Pancrea

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