Variant report

Variant	rs6844289
Chromosome Location	chr4:27092389-27092390
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:27089607..27092447-chr4:27116459..27118103,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12503097	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13108236	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13113425	0.90[EUR][1000 genomes]
rs35241736	0.89[EUR][1000 genomes]
rs35281978	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36084087	0.88[EUR][1000 genomes]
rs4234985	0.81[EUR][1000 genomes]
rs4501207	0.85[EUR][1000 genomes]
rs4692163	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs741130	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs741137	0.88[EUR][1000 genomes]
rs757632	0.81[EUR][1000 genomes]
rs759113	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7696691	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4279	chr4:27056372-27101774	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1002082	chr4:27078850-27377252	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv997608	chr4:27085524-27371848	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27087200-27092800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr4:27087400-27095800	Weak transcription	Pancreas	Pancrea
3	chr4:27089000-27093200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr4:27089400-27092600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:27089400-27093200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr4:27091000-27092600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr4:27091000-27092800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:27091000-27097400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr4:27091000-27104200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:27091800-27093200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr4:27092000-27092400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr4:27092000-27092400	Enhancers	Brain Germinal Matrix	brain
13	chr4:27092000-27093000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr4:27092000-27093000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:27092000-27094600	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr4:27092000-27096400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr4:27092000-27100800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:27092200-27092400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
19	chr4:27092200-27092600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
20	chr4:27092200-27092600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr4:27092200-27092800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:27092200-27092800	Bivalent Enhancer	Fetal Brain Male	brain
23	chr4:27092200-27093000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived

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