Variant report

Variant	rs13108236
Chromosome Location	chr4:27088148-27088149
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12503097	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13113425	0.86[EUR][1000 genomes]
rs35241736	0.92[EUR][1000 genomes]
rs35281978	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36084087	0.83[EUR][1000 genomes]
rs4234985	0.83[EUR][1000 genomes]
rs4692163	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55833139	0.82[EUR][1000 genomes]
rs6844289	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs741130	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs741137	0.92[EUR][1000 genomes]
rs759113	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7696691	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4279	chr4:27056372-27101774	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1002082	chr4:27078850-27377252	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv997608	chr4:27085524-27371848	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27086800-27089400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:27086800-27089400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:27087200-27088200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:27087200-27090000	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:27087200-27092800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr4:27087400-27089000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr4:27087400-27091000	Weak transcription	Lung	lung
8	chr4:27087400-27095800	Weak transcription	Pancreas	Pancrea
9	chr4:27087600-27089000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr4:27087800-27092200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr4:27088000-27088200	Bivalent Enhancer	NH-A	brain
12	chr4:27088000-27088400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:27088000-27089400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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