Variant report

Variant	rs12548259
Chromosome Location	chr8:126655106-126655107
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126655040..126656552-chr8:126669129..126671544,2	MCF-7	breast:
2	chr8:126645597..126647696-chr8:126654692..126656987,2	MCF-7	breast:
3	chr8:126610315..126613289-chr8:126653712..126655623,2	MCF-7	breast:
4	chr8:126440357..126445683-chr8:126653712..126658704,14	MCF-7	breast:
5	chr8:126440766..126445599-chr8:126653604..126662049,19	MCF-7	breast:
6	chr8:126446615..126448287-chr8:126653955..126655577,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

rs_ID	r²[population]
rs10095973	1.00[EUR][1000 genomes]
rs13364666	1.00[EUR][1000 genomes]
rs13364676	1.00[EUR][1000 genomes]
rs13364688	1.00[EUR][1000 genomes]
rs13364791	1.00[EUR][1000 genomes]
rs16900750	1.00[EUR][1000 genomes]
rs1979224	1.00[EUR][1000 genomes]
rs28589371	1.00[EUR][1000 genomes]
rs35119232	0.81[ASN][1000 genomes]
rs4372019	1.00[EUR][1000 genomes]
rs55734315	1.00[EUR][1000 genomes]
rs56699992	1.00[EUR][1000 genomes]
rs58950777	1.00[EUR][1000 genomes]
rs59505399	1.00[EUR][1000 genomes]
rs60394496	1.00[EUR][1000 genomes]
rs61501580	1.00[EUR][1000 genomes]
rs61571801	1.00[EUR][1000 genomes]
rs61589624	1.00[EUR][1000 genomes]
rs6990459	1.00[EUR][1000 genomes]
rs73336675	1.00[EUR][1000 genomes]
rs73338611	1.00[EUR][1000 genomes]
rs73338686	1.00[EUR][1000 genomes]
rs73338687	1.00[EUR][1000 genomes]
rs73346808	1.00[EUR][1000 genomes]
rs73346811	1.00[EUR][1000 genomes]
rs73346821	1.00[EUR][1000 genomes]
rs73346881	1.00[EUR][1000 genomes]
rs73346898	1.00[EUR][1000 genomes]
rs73349008	1.00[EUR][1000 genomes]
rs73349041	1.00[EUR][1000 genomes]
rs73349074	1.00[EUR][1000 genomes]
rs73705006	0.81[ASN][1000 genomes]
rs73706850	1.00[EUR][1000 genomes]
rs73706855	1.00[EUR][1000 genomes]
rs7834570	1.00[EUR][1000 genomes]
rs7835068	1.00[EUR][1000 genomes]
rs7835809	1.00[EUR][1000 genomes]
rs7845655	1.00[EUR][1000 genomes]
rs7845670	1.00[EUR][1000 genomes]

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126649800-126655200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr8:126649800-126656600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr8:126649800-126656600	Weak transcription	Stomach Mucosa	stomach
4	chr8:126649800-126660400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:126650000-126656200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr8:126650200-126655400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:126650400-126656000	Weak transcription	Primary B cells from peripheral blood	blood
8	chr8:126650400-126656200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr8:126650400-126656400	Weak transcription	Fetal Heart	heart
10	chr8:126650600-126655200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:126650800-126655600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr8:126650800-126656200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr8:126650800-126656200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr8:126651000-126656200	Weak transcription	Primary B cells from cord blood	blood
15	chr8:126651000-126656400	Weak transcription	Small Intestine	intestine
16	chr8:126651000-126656400	Weak transcription	NHDF-Ad	bronchial
17	chr8:126651000-126656600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr8:126651200-126656200	Weak transcription	Left Ventricle	heart
19	chr8:126651200-126656400	Weak transcription	Lung	lung
20	chr8:126651400-126655800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr8:126651400-126656000	Weak transcription	Spleen	Spleen
22	chr8:126651400-126656600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr8:126651600-126656400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr8:126651800-126655800	Weak transcription	Hela-S3	cervix
25	chr8:126651800-126656000	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr8:126652200-126656000	Weak transcription	HMEC	breast
27	chr8:126652200-126656200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr8:126652200-126656200	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr8:126652400-126657000	Enhancers	Placenta	Placenta
30	chr8:126653200-126655400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr8:126653200-126656400	Enhancers	Liver	Liver
32	chr8:126653200-126656400	Weak transcription	Right Ventricle	heart
33	chr8:126653200-126657400	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr8:126653400-126655200	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr8:126653400-126656400	Enhancers	A549	lung
36	chr8:126653400-126656800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr8:126653400-126657000	Enhancers	Fetal Thymus	thymus
38	chr8:126653400-126657400	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr8:126653400-126660200	Enhancers	GM12878-XiMat	blood
40	chr8:126653600-126657200	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr8:126653800-126655600	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr8:126653800-126656600	Weak transcription	Brain Angular Gyrus	brain
43	chr8:126653800-126657600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr8:126654000-126655400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr8:126654000-126656600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr8:126654000-126656600	Weak transcription	Fetal Brain Male	brain
47	chr8:126654200-126655400	Weak transcription	Colonic Mucosa	Colon
48	chr8:126654200-126656400	Weak transcription	Fetal Intestine Small	intestine
49	chr8:126654200-126656400	Weak transcription	Right Atrium	heart
50	chr8:126654200-126656400	Weak transcription	Osteobl	bone

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