Variant report

Variant	rs73346821
Chromosome Location	chr8:126514200-126514201
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126506743..126511658-chr8:126513008..126519867,6	MCF-7	breast:
2	chr8:126512692..126514676-chr8:126526124..126528188,2	MCF-7	breast:
3	chr8:126511979..126514547-chr8:126519373..126521344,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10095973	1.00[EUR][1000 genomes]
rs12548259	1.00[EUR][1000 genomes]
rs13364666	1.00[EUR][1000 genomes]
rs13364676	1.00[EUR][1000 genomes]
rs13364688	1.00[EUR][1000 genomes]
rs13364791	1.00[EUR][1000 genomes]
rs16900750	1.00[EUR][1000 genomes]
rs1979224	1.00[EUR][1000 genomes]
rs28589371	1.00[EUR][1000 genomes]
rs4372019	1.00[EUR][1000 genomes]
rs55734315	1.00[EUR][1000 genomes]
rs56699992	1.00[EUR][1000 genomes]
rs58950777	1.00[EUR][1000 genomes]
rs59505399	1.00[EUR][1000 genomes]
rs60394496	1.00[EUR][1000 genomes]
rs61501580	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61571801	1.00[EUR][1000 genomes]
rs61589624	1.00[EUR][1000 genomes]
rs6990459	1.00[EUR][1000 genomes]
rs7010651	1.00[EUR][1000 genomes]
rs73336675	1.00[EUR][1000 genomes]
rs73338611	1.00[EUR][1000 genomes]
rs73338686	1.00[EUR][1000 genomes]
rs73338687	1.00[EUR][1000 genomes]
rs73346808	1.00[EUR][1000 genomes]
rs73346811	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73346849	1.00[AMR][1000 genomes]
rs73346881	1.00[EUR][1000 genomes]
rs73346898	1.00[EUR][1000 genomes]
rs73349008	1.00[EUR][1000 genomes]
rs73349041	1.00[EUR][1000 genomes]
rs73349074	1.00[EUR][1000 genomes]
rs73706850	1.00[EUR][1000 genomes]
rs73706855	1.00[EUR][1000 genomes]
rs7834570	1.00[EUR][1000 genomes]
rs7835068	1.00[EUR][1000 genomes]
rs7835809	1.00[EUR][1000 genomes]
rs7845655	1.00[EUR][1000 genomes]
rs7845670	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126509400-126518200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr8:126510400-126521200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:126510600-126514800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:126510800-126516000	Weak transcription	Lung	lung
5	chr8:126511000-126514200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr8:126511000-126514200	Weak transcription	NH-A	brain
7	chr8:126511400-126521400	Weak transcription	Hela-S3	cervix
8	chr8:126511400-126522000	Weak transcription	Fetal Lung	lung
9	chr8:126511600-126515600	Weak transcription	Fetal Intestine Small	intestine
10	chr8:126511600-126515600	Weak transcription	Left Ventricle	heart
11	chr8:126511600-126516000	Weak transcription	Right Atrium	heart
12	chr8:126511600-126516200	Weak transcription	Fetal Kidney	kidney
13	chr8:126511800-126515400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr8:126511800-126516000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr8:126511800-126516000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr8:126511800-126517200	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr8:126511800-126524000	Weak transcription	Brain Hippocampus Middle	brain
18	chr8:126512000-126515200	Weak transcription	Fetal Muscle Leg	muscle
19	chr8:126512000-126515600	Weak transcription	Psoas Muscle	Psoas
20	chr8:126512000-126515800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr8:126512000-126516200	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr8:126512200-126517800	Weak transcription	Spleen	Spleen
23	chr8:126512200-126518000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr8:126512600-126515600	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr8:126512800-126514200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr8:126512800-126525000	Weak transcription	Esophagus	oesophagus
27	chr8:126513400-126514200	Enhancers	Liver	Liver
28	chr8:126513800-126514400	Enhancers	NHEK	skin
29	chr8:126513800-126514600	Enhancers	A549	lung
30	chr8:126513800-126514800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr8:126513800-126514800	Enhancers	Adipose Nuclei	Adipose
32	chr8:126513800-126514800	Enhancers	HMEC	breast
33	chr8:126513800-126516000	Enhancers	Placenta	Placenta
34	chr8:126514000-126514400	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr8:126514000-126514400	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr8:126514000-126514400	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr8:126514000-126514400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr8:126514000-126514400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr8:126514000-126514400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr8:126514000-126514400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr8:126514000-126514600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr8:126514000-126514600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr8:126514000-126514600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr8:126514000-126514600	Flanking Active TSS	HepG2	liver
45	chr8:126514200-126514400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr8:126514200-126514400	Flanking Active TSS	Liver	Liver
47	chr8:126514200-126514400	Enhancers	Placenta Amnion	Placenta Amnion
48	chr8:126514200-126514600	Enhancers	NH-A	brain

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