Variant report

Variant	rs73338611
Chromosome Location	chr8:126626512-126626513
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:126442594..126445786-chr8:126623809..126626952,4	MCF-7	breast:
2	chr8:126619524..126621490-chr8:126626488..126629333,2	K562	blood:
3	chr8:126619990..126624184-chr8:126625667..126627988,3	K562	blood:
4	chr8:126624246..126627028-chr8:126627335..126628862,2	MCF-7	breast:
5	chr8:126442492..126444588-chr8:126626090..126628440,2	MCF-7	breast:
6	chr8:126619050..126624593-chr8:126625487..126628558,5	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIB1-12	chr8:126625712-126626709	NONHSAT128977

No data

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10095973	1.00[EUR][1000 genomes]
rs12548259	1.00[EUR][1000 genomes]
rs13364666	1.00[EUR][1000 genomes]
rs13364676	1.00[EUR][1000 genomes]
rs13364688	1.00[EUR][1000 genomes]
rs13364791	1.00[EUR][1000 genomes]
rs16900750	1.00[EUR][1000 genomes]
rs1979224	1.00[EUR][1000 genomes]
rs28589371	1.00[EUR][1000 genomes]
rs4372019	1.00[EUR][1000 genomes]
rs55734315	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56699992	1.00[EUR][1000 genomes]
rs58950777	1.00[EUR][1000 genomes]
rs59505399	1.00[EUR][1000 genomes]
rs60394496	1.00[EUR][1000 genomes]
rs61501580	1.00[EUR][1000 genomes]
rs61571801	1.00[EUR][1000 genomes]
rs61589624	1.00[EUR][1000 genomes]
rs6990459	1.00[EUR][1000 genomes]
rs7010651	1.00[EUR][1000 genomes]
rs73336675	1.00[EUR][1000 genomes]
rs73338686	1.00[EUR][1000 genomes]
rs73338687	1.00[EUR][1000 genomes]
rs73346808	1.00[EUR][1000 genomes]
rs73346811	1.00[EUR][1000 genomes]
rs73346821	1.00[EUR][1000 genomes]
rs73346881	1.00[EUR][1000 genomes]
rs73346898	1.00[EUR][1000 genomes]
rs73349008	1.00[EUR][1000 genomes]
rs73349041	1.00[EUR][1000 genomes]
rs73349074	1.00[EUR][1000 genomes]
rs73706850	1.00[EUR][1000 genomes]
rs73706855	1.00[EUR][1000 genomes]
rs7834570	1.00[EUR][1000 genomes]
rs7835068	1.00[EUR][1000 genomes]
rs7835809	1.00[EUR][1000 genomes]
rs7845655	1.00[EUR][1000 genomes]
rs7845670	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv6377	chr8:126579620-126639253	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv38	chr8:126593465-126639253	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3376403	chr8:126624370-126628568	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126618800-126627800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:126620200-126627800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr8:126622200-126626600	Weak transcription	Spleen	Spleen
4	chr8:126624000-126628200	Enhancers	Fetal Muscle Leg	muscle
5	chr8:126624600-126628000	Enhancers	Placenta	Placenta
6	chr8:126625400-126626600	Enhancers	Fetal Muscle Trunk	muscle
7	chr8:126625400-126626600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
8	chr8:126625400-126627200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:126625400-126627200	Enhancers	Adipose Nuclei	Adipose
10	chr8:126625600-126627400	Enhancers	Fetal Lung	lung
11	chr8:126625600-126627600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr8:126625600-126627800	Enhancers	Fetal Brain Male	brain
13	chr8:126625800-126626600	Bivalent Enhancer	Fetal Heart	heart
14	chr8:126625800-126626800	Enhancers	Lung	lung
15	chr8:126625800-126626800	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
16	chr8:126626000-126626600	Enhancers	HSMM	muscle
17	chr8:126626000-126626600	Enhancers	HSMMtube	muscle
18	chr8:126626000-126626600	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr8:126626000-126627000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr8:126626000-126627000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr8:126626000-126627200	Enhancers	Brain Cingulate Gyrus	brain
22	chr8:126626400-126627600	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr8:126626400-126627800	Weak transcription	Brain Hippocampus Middle	brain

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