Variant report

Variant	rs7834570
Chromosome Location	chr8:126534294-126534295
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:126532570-126534676	SK-N-MC	brain:	n/a	n/a
2	FOXP2	chr8:126534216-126534592	SK-N-MC	brain:	n/a	n/a
3	POLR2A	chr8:126533308-126534678	SK-N-MC	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr8:126532844..126534888-chr8:126555754..126558002,2	MCF-7	breast:
2	chr8:126531941..126534685-chr8:126537935..126540174,2	K562	blood:
3	chr8:126531237..126534656-chr8:126536046..126538619,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253111	TF binding region

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10095973	1.00[EUR][1000 genomes]
rs12548259	1.00[EUR][1000 genomes]
rs13364666	1.00[EUR][1000 genomes]
rs13364676	1.00[EUR][1000 genomes]
rs13364688	1.00[EUR][1000 genomes]
rs13364791	1.00[EUR][1000 genomes]
rs16900750	1.00[EUR][1000 genomes]
rs1979224	1.00[EUR][1000 genomes]
rs28589371	1.00[EUR][1000 genomes]
rs4372019	1.00[EUR][1000 genomes]
rs55734315	1.00[EUR][1000 genomes]
rs56699992	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58950777	1.00[EUR][1000 genomes]
rs59505399	1.00[EUR][1000 genomes]
rs60394496	1.00[EUR][1000 genomes]
rs61501580	1.00[EUR][1000 genomes]
rs61571801	1.00[EUR][1000 genomes]
rs61589624	1.00[EUR][1000 genomes]
rs6990459	1.00[EUR][1000 genomes]
rs7010651	1.00[EUR][1000 genomes]
rs73336675	1.00[EUR][1000 genomes]
rs73338611	1.00[EUR][1000 genomes]
rs73338686	1.00[EUR][1000 genomes]
rs73338687	1.00[EUR][1000 genomes]
rs73346808	1.00[EUR][1000 genomes]
rs73346811	1.00[EUR][1000 genomes]
rs73346821	1.00[EUR][1000 genomes]
rs73346881	1.00[EUR][1000 genomes]
rs73346898	1.00[EUR][1000 genomes]
rs73349008	1.00[EUR][1000 genomes]
rs73349041	1.00[EUR][1000 genomes]
rs73349074	1.00[EUR][1000 genomes]
rs73706850	1.00[EUR][1000 genomes]
rs73706855	1.00[EUR][1000 genomes]
rs7835068	1.00[EUR][1000 genomes]
rs7835809	1.00[EUR][1000 genomes]
rs7845655	1.00[EUR][1000 genomes]
rs7845670	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126518000-126534400	Weak transcription	Right Atrium	heart
2	chr8:126525800-126538800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:126526000-126537400	Weak transcription	Fetal Lung	lung
4	chr8:126526200-126534400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr8:126527000-126538200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr8:126527400-126534400	Weak transcription	Osteobl	bone
7	chr8:126527600-126537000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:126528000-126537200	Weak transcription	Psoas Muscle	Psoas
9	chr8:126528600-126537000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:126528600-126537000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr8:126529400-126534600	Weak transcription	Adipose Nuclei	Adipose
12	chr8:126529400-126537000	Weak transcription	Liver	Liver
13	chr8:126532000-126536200	Weak transcription	Hela-S3	cervix
14	chr8:126532000-126537000	Weak transcription	A549	lung
15	chr8:126532000-126537000	Weak transcription	NHEK	skin
16	chr8:126532200-126537000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr8:126533600-126534800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr8:126533600-126539000	Weak transcription	Esophagus	oesophagus
19	chr8:126534200-126534400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr8:126534200-126534800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr8:126534200-126535400	Enhancers	Ovary	ovary

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