Variant report

Variant	rs73346808
Chromosome Location	chr8:126509686-126509687
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126506743..126511658-chr8:126513008..126519867,6	MCF-7	breast:
2	chr8:126442269..126445163-chr8:126508425..126512004,4	MCF-7	breast:
3	chr8:126506597..126510662-chr8:126558382..126560579,3	MCF-7	breast:
4	chr8:126487251..126488761-chr8:126508249..126510856,2	MCF-7	breast:
5	chr8:126509004..126511702-chr8:126604698..126606294,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10095973	1.00[EUR][1000 genomes]
rs12548259	1.00[EUR][1000 genomes]
rs13364666	1.00[EUR][1000 genomes]
rs13364676	1.00[EUR][1000 genomes]
rs13364688	1.00[EUR][1000 genomes]
rs13364791	1.00[EUR][1000 genomes]
rs16900750	1.00[EUR][1000 genomes]
rs1979224	1.00[EUR][1000 genomes]
rs28589371	1.00[EUR][1000 genomes]
rs4372019	1.00[EUR][1000 genomes]
rs55734315	1.00[EUR][1000 genomes]
rs56699992	1.00[EUR][1000 genomes]
rs58950777	1.00[EUR][1000 genomes]
rs59505399	1.00[EUR][1000 genomes]
rs60394496	1.00[EUR][1000 genomes]
rs61501580	1.00[EUR][1000 genomes]
rs61571801	1.00[EUR][1000 genomes]
rs61589624	1.00[EUR][1000 genomes]
rs6990459	1.00[EUR][1000 genomes]
rs7010651	1.00[EUR][1000 genomes]
rs73336675	1.00[EUR][1000 genomes]
rs73338611	1.00[EUR][1000 genomes]
rs73338686	1.00[EUR][1000 genomes]
rs73338687	1.00[EUR][1000 genomes]
rs73346811	1.00[EUR][1000 genomes]
rs73346821	1.00[EUR][1000 genomes]
rs73346881	1.00[EUR][1000 genomes]
rs73346898	1.00[EUR][1000 genomes]
rs73349008	1.00[EUR][1000 genomes]
rs73349041	1.00[EUR][1000 genomes]
rs73349074	1.00[EUR][1000 genomes]
rs73706850	1.00[EUR][1000 genomes]
rs73706855	1.00[EUR][1000 genomes]
rs7834570	1.00[EUR][1000 genomes]
rs7835068	1.00[EUR][1000 genomes]
rs7835809	1.00[EUR][1000 genomes]
rs7845655	1.00[EUR][1000 genomes]
rs7845670	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126498600-126509800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:126502200-126509800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:126504200-126511400	Weak transcription	Primary B cells from cord blood	blood
4	chr8:126505000-126511400	Weak transcription	Spleen	Spleen
5	chr8:126506800-126512800	Enhancers	Placenta	Placenta
6	chr8:126507600-126510000	Weak transcription	Lung	lung
7	chr8:126508000-126510200	Weak transcription	A549	lung
8	chr8:126508000-126510600	Weak transcription	Esophagus	oesophagus
9	chr8:126508200-126510800	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr8:126508400-126510400	Weak transcription	Adipose Nuclei	Adipose
11	chr8:126508800-126511600	Enhancers	Fetal Stomach	stomach
12	chr8:126509200-126510400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr8:126509200-126510600	Weak transcription	HepG2	liver
14	chr8:126509200-126510800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr8:126509200-126511000	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr8:126509200-126511400	Weak transcription	Fetal Intestine Small	intestine
17	chr8:126509200-126511400	Enhancers	Hela-S3	cervix
18	chr8:126509400-126510000	Weak transcription	Liver	Liver
19	chr8:126509400-126510600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr8:126509400-126510600	Weak transcription	Fetal Lung	lung
21	chr8:126509400-126510600	Weak transcription	NHLF	lung
22	chr8:126509400-126510800	Weak transcription	Fetal Kidney	kidney
23	chr8:126509400-126518200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr8:126509600-126514000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links