Variant report

Variant	rs12553249
Chromosome Location	chr9:102192892-102192893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12553685	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1373131	0.82[ASN][1000 genomes]
rs16918616	0.81[ASN][1000 genomes]
rs17795913	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2900171	0.81[ASN][1000 genomes]
rs57550843	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57713933	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs617164	0.82[ASN][1000 genomes]
rs623874	0.82[ASN][1000 genomes]
rs634202	0.82[ASN][1000 genomes]
rs638261	0.82[ASN][1000 genomes]
rs649057	0.82[ASN][1000 genomes]
rs666399	0.82[ASN][1000 genomes]
rs7863995	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv831667	chr9:102068047-102285691	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102192200-102193400	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr9:102192200-102193600	Enhancers	Osteobl	bone
3	chr9:102192200-102194000	Enhancers	NH-A	brain
4	chr9:102192200-102197600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:102192400-102193200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:102192400-102193800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:102192600-102193200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:102192600-102193200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr9:102192600-102193200	Enhancers	Spleen	Spleen
10	chr9:102192600-102194000	Enhancers	NHEK	skin
11	chr9:102192600-102194200	Enhancers	NHDF-Ad	bronchial
12	chr9:102192800-102193200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr9:102192800-102194600	Enhancers	HUVEC	blood vessel
14	chr9:102192800-102195600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:102192800-102195800	Weak transcription	Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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