Variant report

Variant	rs2900171
Chromosome Location	chr9:102251637-102251638
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12553249	0.81[ASN][1000 genomes]
rs12553685	0.80[ASN][1000 genomes]
rs1373131	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16918616	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57713933	0.81[ASN][1000 genomes]
rs617164	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs623874	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs634202	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs638261	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs649057	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs666399	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7863995	0.84[ASN][1000 genomes]
rs927580	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831667	chr9:102068047-102285691	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102248000-102253200	Weak transcription	Fetal Muscle Leg	muscle
2	chr9:102248600-102254000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:102250400-102254600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:102250400-102254600	Enhancers	NHLF	lung
5	chr9:102250600-102252000	Enhancers	NHDF-Ad	bronchial
6	chr9:102250600-102254800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:102251200-102252000	Enhancers	Fetal Thymus	thymus
8	chr9:102251400-102252600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr9:102251400-102253000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr9:102251600-102252400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:102251600-102253400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links