Variant report

Variant	rs666399
Chromosome Location	chr9:102235857-102235858
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12553249	0.82[ASN][1000 genomes]
rs12553685	0.81[ASN][1000 genomes]
rs1373131	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16918616	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2900171	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs57713933	0.82[ASN][1000 genomes]
rs617164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs623874	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs634202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs638261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs649057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7863995	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831667	chr9:102068047-102285691	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv6636	chr9:102197504-102242604	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102235600-102238400	Enhancers	Fetal Heart	heart
2	chr9:102235800-102236000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:102235800-102236200	Enhancers	Psoas Muscle	Psoas
4	chr9:102235800-102236400	Enhancers	Fetal Brain Female	brain
5	chr9:102235800-102236600	Enhancers	Colon Smooth Muscle	Colon
6	chr9:102235800-102236600	Enhancers	Fetal Muscle Leg	muscle
7	chr9:102235800-102236800	Enhancers	Left Ventricle	heart
8	chr9:102235800-102236800	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr9:102235800-102236800	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr9:102235800-102237000	Enhancers	Fetal Brain Male	brain
11	chr9:102235800-102238800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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