Variant report

Variant	rs16918616
Chromosome Location	chr9:102272438-102272439
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12553249	0.81[ASN][1000 genomes]
rs12553685	0.80[ASN][1000 genomes]
rs1373131	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2900171	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57713933	0.81[ASN][1000 genomes]
rs617164	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs623874	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs634202	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs638261	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs649057	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs666399	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7863995	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831667	chr9:102068047-102285691	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102271200-102275000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr9:102271400-102273400	Enhancers	Primary B cells from cord blood	blood
3	chr9:102271400-102273400	Enhancers	Primary B cells from peripheral blood	blood
4	chr9:102271600-102272600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr9:102271800-102272800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr9:102271800-102273200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr9:102272000-102273000	Weak transcription	Pancreas	Pancrea
8	chr9:102272000-102273200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:102272000-102273200	Weak transcription	Fetal Muscle Leg	muscle
10	chr9:102272200-102272600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr9:102272200-102272800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr9:102272200-102272800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr9:102272200-102272800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr9:102272200-102273400	Enhancers	GM12878-XiMat	blood
15	chr9:102272400-102276200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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