Variant report

Variant	rs12577373
Chromosome Location	chr11:83232814-83232815
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:83232478..83233198-chr11:83435149..83435724,2	MCF-7	breast:
2	chr11:83232530..83233170-chr11:83527353..83527936,3	MCF-7	breast:
3	chr11:83232403..83232986-chr11:83527322..83527852,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10501540	0.92[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.91[ASN][1000 genomes]
rs10751093	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10751094	0.86[ASN][1000 genomes]
rs10792684	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10792687	0.83[ASN][1000 genomes]
rs10898125	0.88[CEU][hapmap]
rs10898128	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10898131	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10898132	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10898133	0.87[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10898134	0.81[CEU][hapmap]
rs11233628	0.87[CEU][hapmap];0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs11233633	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11233641	0.87[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11233643	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11233645	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11233648	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11233652	0.81[ASN][1000 genomes]
rs11233653	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233654	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233655	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11233656	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11233657	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233663	0.90[CEU][hapmap]
rs11600016	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11601048	0.92[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11601771	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11606666	0.86[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs12223102	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12794550	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1367978	0.92[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1367987	0.84[CEU][hapmap]
rs1432043	0.85[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1432044	0.85[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1432049	0.88[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1864775	0.92[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2116482	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35933506	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3793945	0.81[CEU][hapmap]
rs3793946	0.80[CEU][hapmap]
rs60007546	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs60824635	0.83[ASN][1000 genomes]
rs6592120	0.84[CEU][hapmap]
rs7109050	0.81[ASN][1000 genomes]
rs7113167	0.80[CEU][hapmap]
rs7116939	0.87[CEU][hapmap];0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs7127319	0.88[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7127859	0.81[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83229800-83236600	Weak transcription	Pancreas	Pancrea
2	chr11:83231400-83233400	Enhancers	Brain Angular Gyrus	brain
3	chr11:83231600-83233000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr11:83231800-83233000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:83231800-83233000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:83231800-83233000	Enhancers	HepG2	liver
7	chr11:83231800-83233400	Enhancers	Brain Substantia Nigra	brain
8	chr11:83232000-83233000	Enhancers	Psoas Muscle	Psoas
9	chr11:83232000-83235000	Enhancers	Brain Hippocampus Middle	brain
10	chr11:83232200-83234800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:83232600-83233000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:83232600-83234000	Weak transcription	Brain Anterior Caudate	brain
13	chr11:83232600-83234800	Weak transcription	Brain Inferior Temporal Lobe	brain

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