Variant report

Variant	rs3793946
Chromosome Location	chr11:83247787-83247788
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83245755..83248729-chr11:83250571..83253175,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10501540	0.81[CEU][hapmap]
rs10751093	0.81[CEU][hapmap]
rs10792688	0.87[CHB][hapmap]
rs10898134	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[YRI][hapmap];0.86[ASN][1000 genomes]
rs11233654	0.81[CEU][hapmap]
rs11233657	0.81[CEU][hapmap]
rs11233663	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11601048	0.80[CEU][hapmap]
rs12223102	0.81[CEU][hapmap]
rs12577373	0.80[CEU][hapmap]
rs12794550	0.81[CEU][hapmap]
rs1367978	0.81[CEU][hapmap]
rs1367984	0.87[CHB][hapmap]
rs1367985	0.87[CHB][hapmap]
rs1367987	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1367988	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1432052	0.87[CHB][hapmap]
rs1432057	0.96[CEU][hapmap];0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs1432058	0.87[CHB][hapmap]
rs1465668	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1465671	0.87[CHB][hapmap]
rs2116483	0.87[CHB][hapmap]
rs2195801	0.87[CHB][hapmap]
rs3793945	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3815988	0.87[CHB][hapmap]
rs4316529	0.96[CEU][hapmap];0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs4399351	0.87[CHB][hapmap]
rs4494323	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[YRI][hapmap];0.84[ASN][1000 genomes]
rs4547114	0.87[CHB][hapmap]
rs472415	0.82[CHB][hapmap]
rs516344	0.86[CHB][hapmap]
rs516435	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs574361	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs645427	0.81[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap]
rs6592120	0.89[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.91[TSI][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6592123	0.87[CHB][hapmap]
rs6592124	0.87[CHB][hapmap]
rs7113167	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.93[LWK][hapmap];0.82[MEX][hapmap];0.90[MKK][hapmap];0.89[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7924348	0.96[CEU][hapmap];0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs7926588	0.81[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap]
rs7927435	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7928931	0.85[CEU][hapmap];0.83[CHB][hapmap];0.82[CHD][hapmap]
rs7930252	0.87[CHB][hapmap]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83233400-83250800	Weak transcription	Hela-S3	cervix
2	chr11:83235200-83251000	Weak transcription	Brain Anterior Caudate	brain
3	chr11:83235200-83251200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:83235200-83251200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:83235200-83251400	Weak transcription	Brain Angular Gyrus	brain
6	chr11:83243000-83251200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:83245200-83255000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:83245400-83251600	Weak transcription	Brain Substantia Nigra	brain
9	chr11:83245600-83249400	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:83245800-83251000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:83246000-83250800	Weak transcription	Fetal Brain Female	brain
12	chr11:83246000-83251000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:83246000-83251400	Weak transcription	Fetal Brain Male	brain
14	chr11:83246600-83249800	Weak transcription	Aorta	Aorta
15	chr11:83247600-83249400	Weak transcription	Psoas Muscle	Psoas

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