Variant report

Variant	rs6592120
Chromosome Location	chr11:83235833-83235834
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10501540	0.84[CEU][hapmap]
rs10751093	0.84[CEU][hapmap]
rs10792688	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs10898125	0.80[CEU][hapmap]
rs10898133	0.81[CEU][hapmap]
rs10898134	0.92[CEU][hapmap];0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs11233628	0.81[CEU][hapmap]
rs11233654	0.84[CEU][hapmap]
rs11233657	0.84[CEU][hapmap]
rs11233663	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11233667	0.81[ASN][1000 genomes]
rs11600016	0.80[CEU][hapmap]
rs11601048	0.84[CEU][hapmap]
rs12223102	0.84[CEU][hapmap]
rs12577373	0.84[CEU][hapmap]
rs12794550	0.84[CEU][hapmap]
rs1367978	0.84[CEU][hapmap]
rs1367984	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs1367985	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs1367987	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1367988	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1432049	0.81[CEU][hapmap]
rs1432052	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs1432054	0.82[JPT][hapmap]
rs1432057	0.92[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs1432058	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs1465668	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1465671	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs1864775	0.80[CEU][hapmap]
rs2116483	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs2195801	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs3793945	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3793946	0.89[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.91[TSI][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3815988	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs4316529	0.92[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs4399351	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs4494323	0.92[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs4547114	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs472415	0.82[JPT][hapmap]
rs505998	0.81[CHB][hapmap]
rs516344	0.81[CHB][hapmap];0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs516435	0.82[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs543068	0.81[ASN][1000 genomes]
rs574361	0.82[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs645427	0.82[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs656727	0.81[ASN][1000 genomes]
rs658438	0.81[ASN][1000 genomes]
rs6592123	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs6592124	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs659427	0.81[ASN][1000 genomes]
rs666845	0.82[CHB][hapmap]
rs684857	0.82[CHB][hapmap]
rs694847	0.81[ASN][1000 genomes]
rs7113167	0.89[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.86[MKK][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7116939	0.81[CEU][hapmap]
rs7127319	0.81[CEU][hapmap]
rs7924348	0.92[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs7926588	0.82[CHB][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs7927435	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7928931	0.81[CEU][hapmap];0.82[CHD][hapmap]
rs7930252	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs7939707	0.81[ASN][1000 genomes]
rs7940037	0.81[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83229800-83236600	Weak transcription	Pancreas	Pancrea
2	chr11:83233400-83236400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr11:83233400-83236600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:83233400-83250800	Weak transcription	Hela-S3	cervix
5	chr11:83235000-83239000	Weak transcription	Psoas Muscle	Psoas
6	chr11:83235000-83244200	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:83235200-83238400	Weak transcription	Liver	Liver
8	chr11:83235200-83251000	Weak transcription	Brain Anterior Caudate	brain
9	chr11:83235200-83251200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:83235200-83251200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:83235200-83251400	Weak transcription	Brain Angular Gyrus	brain
12	chr11:83235800-83236600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:83235800-83244400	Weak transcription	Brain Substantia Nigra	brain

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