Variant report

Variant	rs11233628
Chromosome Location	chr11:83187894-83187895
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10501540	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10751093	0.96[CEU][hapmap];0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs10792684	0.88[ASN][1000 genomes]
rs10898125	0.92[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10898128	0.88[ASN][1000 genomes]
rs10898132	0.86[ASN][1000 genomes]
rs10898133	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];0.83[ASN][1000 genomes]
rs10898134	0.85[CEU][hapmap]
rs11233633	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11233641	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.88[ASN][1000 genomes]
rs11233643	0.88[ASN][1000 genomes]
rs11233645	0.88[ASN][1000 genomes]
rs11233648	0.88[ASN][1000 genomes]
rs11233652	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11233653	0.85[ASN][1000 genomes]
rs11233654	0.96[CEU][hapmap];0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs11233655	0.87[ASN][1000 genomes]
rs11233656	0.87[ASN][1000 genomes]
rs11233657	0.96[CEU][hapmap];0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs11233663	0.90[CEU][hapmap]
rs11600016	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11601048	0.96[CEU][hapmap];0.95[CHB][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11601771	0.88[ASN][1000 genomes]
rs11606666	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12223102	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.88[ASN][1000 genomes]
rs12577373	0.87[CEU][hapmap];0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs12794550	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];0.87[ASN][1000 genomes]
rs1367978	0.96[CEU][hapmap];0.95[CHB][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1367987	0.81[CEU][hapmap]
rs1432043	0.89[CEU][hapmap];0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs1432044	0.89[CEU][hapmap];0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs1432049	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs1432057	0.81[CEU][hapmap]
rs1465669	0.86[ASN][1000 genomes]
rs1864775	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1897372	0.81[CHB][hapmap]
rs2116482	0.88[ASN][1000 genomes]
rs2436156	0.84[CHD][hapmap]
rs35933506	0.88[ASN][1000 genomes]
rs4316529	0.81[CEU][hapmap]
rs4494323	0.80[CEU][hapmap]
rs515618	0.81[TSI][hapmap]
rs541133	0.82[JPT][hapmap]
rs558211	0.84[MEX][hapmap]
rs571331	0.82[JPT][hapmap]
rs57477484	0.91[ASN][1000 genomes]
rs60007546	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60824635	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs653546	0.84[MEX][hapmap]
rs6592120	0.81[CEU][hapmap]
rs671313	0.84[CHD][hapmap]
rs7109050	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7116939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7127319	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs7127859	0.92[CEU][hapmap];0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs7131385	0.81[CHB][hapmap]
rs7924348	0.81[CEU][hapmap]
rs7928931	0.84[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11233628	CCDC90B	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83183600-83192000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:83183800-83191000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:83183800-83191200	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:83187200-83196600	Weak transcription	Brain Substantia Nigra	brain
5	chr11:83187400-83191200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:83187400-83191200	Weak transcription	Brain Anterior Caudate	brain
7	chr11:83187400-83191400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:83187400-83191400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:83187400-83191400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:83187600-83189200	Weak transcription	Fetal Lung	lung
11	chr11:83187600-83191400	Weak transcription	Brain Angular Gyrus	brain
12	chr11:83187600-83191600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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