Variant report

Variant	rs653546
Chromosome Location	chr11:83311905-83311906
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83306213..83308073-chr11:83310523..83313499,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11233628	0.84[MEX][hapmap]
rs11233682	0.80[ASN][1000 genomes]
rs2436152	0.82[CHB][hapmap]
rs2436153	0.81[ASN][1000 genomes]
rs2436155	0.83[ASN][1000 genomes]
rs2436156	1.00[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.94[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.85[EUR][1000 genomes]
rs2436158	0.82[CHB][hapmap]
rs2508720	0.82[CHB][hapmap]
rs485199	0.81[JPT][hapmap]
rs489567	0.82[CEU][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs491632	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs493431	0.96[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs494303	0.96[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs506718	0.85[CHB][hapmap]
rs510978	0.82[CEU][hapmap];0.87[JPT][hapmap]
rs513020	0.82[CHB][hapmap]
rs513710	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs515618	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.87[JPT][hapmap];0.94[MEX][hapmap];0.94[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs516344	0.88[CEU][hapmap]
rs516435	0.89[CEU][hapmap]
rs532467	0.95[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs535755	0.88[EUR][1000 genomes]
rs535809	0.82[CHB][hapmap]
rs541133	0.96[CEU][hapmap];0.82[CHB][hapmap];0.80[JPT][hapmap];0.85[EUR][1000 genomes]
rs543147	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs546557	0.96[CEU][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes]
rs548327	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[EUR][1000 genomes]
rs551108	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs553935	0.86[CHB][hapmap]
rs558211	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs560846	0.88[EUR][1000 genomes]
rs561890	0.92[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs571331	0.96[CEU][hapmap];0.82[CHB][hapmap];0.85[EUR][1000 genomes]
rs574361	0.88[CEU][hapmap]
rs582207	0.86[CHB][hapmap]
rs583944	0.82[CHB][hapmap]
rs585240	0.86[CHB][hapmap]
rs591422	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs603174	0.82[CHB][hapmap]
rs605825	0.82[CHB][hapmap]
rs611766	0.86[CHB][hapmap]
rs61902066	0.85[EUR][1000 genomes]
rs633191	0.82[CHB][hapmap]
rs635823	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.94[LWK][hapmap];0.94[MEX][hapmap];0.94[MKK][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs641838	0.81[CHB][hapmap]
rs645427	0.89[CEU][hapmap];0.86[TSI][hapmap]
rs651491	0.85[CEU][hapmap];0.93[JPT][hapmap]
rs666675	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs667730	0.82[CHB][hapmap]
rs671313	0.96[CEU][hapmap];0.82[CHB][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs671321	0.82[CHB][hapmap]
rs676115	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs684110	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs688997	0.81[CHB][hapmap]
rs694613	0.86[CHB][hapmap]
rs7116939	0.84[MEX][hapmap]
rs7926588	0.89[CEU][hapmap];0.86[TSI][hapmap]
rs7928931	0.84[CEU][hapmap];0.83[TSI][hapmap];0.92[YRI][hapmap]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83309000-83314600	Enhancers	Fetal Brain Male	brain
2	chr11:83311000-83312400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:83311000-83312400	Enhancers	Fetal Brain Female	brain
4	chr11:83311400-83312000	Enhancers	Brain Anterior Caudate	brain
5	chr11:83311600-83312000	Enhancers	Brain Angular Gyrus	brain
6	chr11:83311600-83312000	Enhancers	Brain Hippocampus Middle	brain
7	chr11:83311600-83312000	Enhancers	Pancreas	Pancrea
8	chr11:83311800-83312000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:83311800-83312000	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr11:83311800-83312400	Enhancers	Brain Substantia Nigra	brain
11	chr11:83311800-83312800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:83311800-83313600	Enhancers	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links