Variant report

Variant	rs489567
Chromosome Location	chr11:83326979-83326980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs2436153	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2436155	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2436156	0.85[CEU][hapmap];0.94[JPT][hapmap]
rs485199	0.89[CEU][hapmap]
rs494303	0.85[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs510978	1.00[ASW][hapmap];0.92[CEU][hapmap];0.85[CHD][hapmap];0.87[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs515618	0.85[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs516344	0.84[CEU][hapmap]
rs516435	0.85[CEU][hapmap]
rs532467	0.83[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap]
rs541133	0.85[CEU][hapmap];0.93[JPT][hapmap]
rs546557	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs548327	0.88[CEU][hapmap];0.86[JPT][hapmap]
rs551108	0.85[CEU][hapmap];0.80[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs558211	0.85[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs561890	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs571331	0.85[CEU][hapmap];0.88[JPT][hapmap]
rs574361	0.84[CEU][hapmap]
rs591422	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs634368	0.84[CHB][hapmap]
rs635823	0.82[CEU][hapmap];0.94[JPT][hapmap]
rs645427	0.85[CEU][hapmap]
rs651491	0.96[CEU][hapmap];0.95[CHB][hapmap];0.80[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs653546	0.82[CEU][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs671313	0.85[CEU][hapmap];0.94[JPT][hapmap]
rs676115	0.84[CEU][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs684729	0.86[CHB][hapmap]
rs688997	0.96[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7926588	0.85[CEU][hapmap]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83323800-83328200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:83324200-83341200	Weak transcription	Brain Anterior Caudate	brain
3	chr11:83324400-83340400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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