Variant report

Variant	rs494303
Chromosome Location	chr11:83295452-83295453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10792690	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11233682	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1465669	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2436156	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2436158	0.87[CHB][hapmap]
rs2508720	0.87[CHB][hapmap]
rs488600	0.82[CHB][hapmap]
rs489567	0.85[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs493431	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs494071	0.82[CHB][hapmap]
rs500359	0.83[CHB][hapmap]
rs506718	0.80[CHB][hapmap]
rs510978	0.88[JPT][hapmap]
rs513020	0.86[CHB][hapmap]
rs513710	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs515618	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs516344	0.92[CEU][hapmap]
rs516435	0.93[CEU][hapmap]
rs532467	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs535755	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs535809	0.86[CHB][hapmap]
rs541133	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs543147	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs546557	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs548327	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs551108	0.92[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs553935	0.81[CHB][hapmap]
rs558211	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs558426	0.82[CHB][hapmap]
rs560846	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs561890	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs571331	1.00[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs574361	0.92[CEU][hapmap]
rs579420	0.83[CHB][hapmap]
rs582207	0.81[CHB][hapmap]
rs585240	0.82[CHB][hapmap]
rs590014	0.82[CHB][hapmap]
rs591422	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs603174	0.86[CHB][hapmap]
rs605303	0.83[CHB][hapmap]
rs605825	0.87[CHB][hapmap]
rs611766	0.82[CHB][hapmap]
rs61902066	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs633191	0.87[CHB][hapmap]
rs635823	0.96[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs641838	0.85[CHB][hapmap]
rs645427	0.92[CEU][hapmap]
rs651491	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs653546	0.96[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs661927	0.83[CHB][hapmap]
rs666675	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs667730	0.87[CHB][hapmap]
rs671313	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs671321	0.87[CHB][hapmap]
rs676115	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs684110	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs688997	0.82[CEU][hapmap];0.89[JPT][hapmap]
rs694613	0.81[CHB][hapmap]
rs7926588	0.92[CEU][hapmap]
rs7928931	0.88[CEU][hapmap];0.92[YRI][hapmap]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83293400-83296000	Enhancers	NHDF-Ad	bronchial
2	chr11:83293800-83295800	Enhancers	Hela-S3	cervix
3	chr11:83294200-83295600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:83294200-83295600	Enhancers	NHEK	skin
5	chr11:83294200-83295800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr11:83294200-83296000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:83294400-83295600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:83294400-83295600	Enhancers	HSMMtube	muscle
9	chr11:83294400-83296000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:83294400-83296000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:83294400-83296000	Enhancers	HSMM	muscle
12	chr11:83294600-83295800	Enhancers	Osteobl	bone
13	chr11:83295000-83295600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:83295200-83295600	Flanking Active TSS	NH-A	brain
15	chr11:83295200-83295800	Flanking Active TSS	GM12878-XiMat	blood
16	chr11:83295400-83295800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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