Variant report

Variant	rs591422
Chromosome Location	chr11:83281464-83281465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10792690	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11233682	0.81[ASN][1000 genomes]
rs1465669	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2436152	0.82[CHB][hapmap]
rs2436156	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.92[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2436158	0.91[CHB][hapmap]
rs2508720	0.91[CHB][hapmap]
rs485199	0.83[JPT][hapmap]
rs488600	0.87[CHB][hapmap]
rs489567	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs493431	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs494071	0.87[CHB][hapmap]
rs494303	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs500359	0.87[CHB][hapmap]
rs506718	0.85[CHB][hapmap]
rs510978	0.88[JPT][hapmap]
rs513020	0.91[CHB][hapmap]
rs513710	0.86[ASN][1000 genomes]
rs515618	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs516344	0.92[CEU][hapmap]
rs516435	0.93[CEU][hapmap]
rs532467	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs535755	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs535809	0.91[CHB][hapmap]
rs541133	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs543147	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs546557	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs548327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs551108	0.92[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs553935	0.86[CHB][hapmap]
rs558211	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs558426	0.87[CHB][hapmap]
rs560846	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs561890	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs571331	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs574361	0.93[CEU][hapmap]
rs579420	0.87[CHB][hapmap]
rs582207	0.86[CHB][hapmap]
rs583944	0.82[CHB][hapmap]
rs585240	0.86[CHB][hapmap]
rs590014	0.87[CHB][hapmap]
rs603174	0.91[CHB][hapmap]
rs605303	0.87[CHB][hapmap]
rs605825	0.91[CHB][hapmap]
rs60824635	0.80[EUR][1000 genomes]
rs611766	0.86[CHB][hapmap]
rs61902066	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs633191	0.91[CHB][hapmap]
rs635823	0.96[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs641838	0.90[CHB][hapmap]
rs645427	0.92[CEU][hapmap]
rs651491	0.82[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap]
rs653546	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs661927	0.87[CHB][hapmap]
rs666675	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs667730	0.91[CHB][hapmap]
rs671313	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs671321	0.91[CHB][hapmap]
rs676115	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs684110	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs688997	0.83[CEU][hapmap];0.83[CHB][hapmap]
rs694613	0.86[CHB][hapmap]
rs7109050	0.83[EUR][1000 genomes]
rs7926588	0.92[CEU][hapmap]
rs7928931	0.89[CEU][hapmap];0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3419257	chr11:83279698-83281748	Weak transcription Enhancers Genic enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83278600-83283800	Weak transcription	NHEK	skin
2	chr11:83278600-83283800	Weak transcription	Osteobl	bone
3	chr11:83278600-83284800	Weak transcription	HSMMtube	muscle
4	chr11:83278600-83284800	Weak transcription	NHLF	lung
5	chr11:83278800-83283600	Weak transcription	NHDF-Ad	bronchial
6	chr11:83278800-83284400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:83279000-83282200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:83279000-83283600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:83279000-83283800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr11:83279000-83289800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:83279200-83282400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr11:83279200-83291200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr11:83279400-83283600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:83279400-83284800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:83280800-83282600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:83281000-83283600	Weak transcription	Brain Hippocampus Middle	brain
17	chr11:83281000-83285800	Weak transcription	Brain Angular Gyrus	brain
18	chr11:83281200-83282600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:83281200-83283600	Weak transcription	Brain Substantia Nigra	brain
20	chr11:83281200-83284400	Weak transcription	Brain Anterior Caudate	brain
21	chr11:83281200-83284800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr11:83281200-83286800	Enhancers	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links