Variant report

Variant	rs553935
Chromosome Location	chr11:83313402-83313403
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83306213..83308073-chr11:83310523..83313499,2	K562	blood:

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10898126	0.84[CEU][hapmap];0.83[TSI][hapmap]
rs10898127	0.83[TSI][hapmap]
rs10898136	0.86[EUR][1000 genomes]
rs11233649	0.86[TSI][hapmap]
rs1225904	0.86[EUR][1000 genomes]
rs1225905	0.85[EUR][1000 genomes]
rs1225906	0.87[EUR][1000 genomes]
rs1225907	0.87[EUR][1000 genomes]
rs1228630	0.87[EUR][1000 genomes]
rs1228632	0.88[CEU][hapmap]
rs12294291	0.83[CEU][hapmap]
rs1469609	0.84[CEU][hapmap];0.83[TSI][hapmap]
rs1897373	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2009715	0.83[CEU][hapmap];0.83[TSI][hapmap]
rs2248115	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2436151	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2436152	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2436154	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2436157	0.87[EUR][1000 genomes]
rs2436158	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2508717	0.89[EUR][1000 genomes]
rs2508720	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2512689	0.87[EUR][1000 genomes]
rs3815986	0.82[MEX][hapmap]
rs4500510	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs472415	0.88[CEU][hapmap]
rs473255	0.96[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes]
rs477046	0.84[CEU][hapmap]
rs478048	0.88[CEU][hapmap]
rs483020	0.96[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap]
rs488600	1.00[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs489752	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs491592	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs491633	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs494071	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.80[YRI][hapmap];0.91[EUR][1000 genomes]
rs494303	0.81[CHB][hapmap]
rs500059	0.88[CEU][hapmap];0.84[TSI][hapmap]
rs500359	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs500571	0.92[CEU][hapmap];0.84[TSI][hapmap]
rs500578	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs501139	0.80[CEU][hapmap];0.82[CHB][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs505621	0.87[CEU][hapmap]
rs505998	0.92[CEU][hapmap];0.84[TSI][hapmap]
rs506718	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs511740	0.84[CEU][hapmap]
rs513020	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs515618	0.81[CHB][hapmap]
rs518143	0.84[CEU][hapmap]
rs526787	0.91[EUR][1000 genomes]
rs531531	0.96[CEU][hapmap];0.83[CHB][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs532467	0.89[CHB][hapmap]
rs533209	0.96[CEU][hapmap];0.83[CHB][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs534325	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs535809	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs536566	0.91[EUR][1000 genomes]
rs544159	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs544921	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs548327	0.85[CHB][hapmap]
rs551108	0.82[CHB][hapmap]
rs558211	0.81[CHB][hapmap]
rs558350	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs558426	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs575952	0.96[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes]
rs579420	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs581178	0.95[CEU][hapmap];0.83[CHB][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes]
rs582207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs583944	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs585240	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs590014	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.80[YRI][hapmap];0.91[EUR][1000 genomes]
rs591422	0.86[CHB][hapmap]
rs598934	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs600570	0.96[CEU][hapmap];0.83[CHB][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs601826	0.96[CEU][hapmap];0.83[CHB][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs603174	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs605303	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.91[EUR][1000 genomes]
rs605825	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs611766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs614398	0.86[EUR][1000 genomes]
rs622934	0.90[EUR][1000 genomes]
rs625091	0.87[EUR][1000 genomes]
rs630105	0.95[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs631277	0.96[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes]
rs633191	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs634368	0.91[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs635823	0.81[CHB][hapmap]
rs638692	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs638746	0.91[EUR][1000 genomes]
rs641838	0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs643835	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs653546	0.86[CHB][hapmap]
rs654442	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs656537	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs661927	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs662966	0.96[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes]
rs663399	0.96[CEU][hapmap];0.83[CHB][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs666845	0.88[CEU][hapmap];0.83[CHD][hapmap];0.91[TSI][hapmap]
rs667730	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs668625	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs671321	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.83[YRI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs676038	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs676115	0.81[CHB][hapmap]
rs684729	0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs684857	0.88[CEU][hapmap];0.81[CHD][hapmap];0.84[TSI][hapmap]
rs694613	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7131385	0.81[CEU][hapmap]
rs958246	0.84[CEU][hapmap]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83309000-83314600	Enhancers	Fetal Brain Male	brain
2	chr11:83311800-83313600	Enhancers	Brain Cingulate Gyrus	brain
3	chr11:83312000-83315600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:83312000-83318800	Weak transcription	Brain Angular Gyrus	brain
5	chr11:83312000-83320400	Weak transcription	Brain Anterior Caudate	brain
6	chr11:83312400-83313600	Weak transcription	Brain Substantia Nigra	brain
7	chr11:83312400-83313600	Weak transcription	Fetal Brain Female	brain
8	chr11:83313000-83313600	Enhancers	NHDF-Ad	bronchial
9	chr11:83313400-83313800	Enhancers	Brain Hippocampus Middle	brain
10	chr11:83313400-83314000	Enhancers	Brain Inferior Temporal Lobe	brain

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