Variant report

Variant	rs654442
Chromosome Location	chr11:83311701-83311702
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83306213..83308073-chr11:83310523..83313499,2	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10898136	0.87[EUR][1000 genomes]
rs1225904	0.88[EUR][1000 genomes]
rs1225905	0.87[EUR][1000 genomes]
rs1225906	0.88[EUR][1000 genomes]
rs1225907	0.88[EUR][1000 genomes]
rs1228630	0.88[EUR][1000 genomes]
rs1897373	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2248115	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2436151	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2436152	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2436154	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2436157	0.88[EUR][1000 genomes]
rs2436158	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2508717	0.90[EUR][1000 genomes]
rs2508720	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2512689	0.88[EUR][1000 genomes]
rs4500510	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4578410	0.80[EUR][1000 genomes]
rs473255	0.88[EUR][1000 genomes]
rs488600	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs489752	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs491592	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs491633	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs494071	0.92[EUR][1000 genomes]
rs500359	0.93[EUR][1000 genomes]
rs500578	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs501139	0.88[EUR][1000 genomes]
rs501473	0.80[EUR][1000 genomes]
rs505998	0.81[EUR][1000 genomes]
rs506718	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs513020	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs523494	0.80[EUR][1000 genomes]
rs526787	0.93[EUR][1000 genomes]
rs531531	0.89[EUR][1000 genomes]
rs533209	0.89[EUR][1000 genomes]
rs534325	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs535809	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs536566	0.93[EUR][1000 genomes]
rs544159	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs544921	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs553935	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs558350	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs558426	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs575952	0.88[EUR][1000 genomes]
rs579420	0.90[EUR][1000 genomes]
rs581178	0.88[EUR][1000 genomes]
rs582207	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs583944	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs585240	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs590014	0.93[EUR][1000 genomes]
rs598934	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs600570	0.89[EUR][1000 genomes]
rs601826	0.89[EUR][1000 genomes]
rs603174	0.90[EUR][1000 genomes]
rs605303	0.93[EUR][1000 genomes]
rs605825	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs611766	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs614398	0.88[EUR][1000 genomes]
rs622934	0.91[EUR][1000 genomes]
rs625091	0.89[EUR][1000 genomes]
rs630105	0.87[EUR][1000 genomes]
rs631277	0.88[EUR][1000 genomes]
rs633191	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs634368	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs638692	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs638746	0.93[EUR][1000 genomes]
rs641838	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs643835	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs656537	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs661927	0.93[EUR][1000 genomes]
rs662966	0.88[EUR][1000 genomes]
rs663399	0.88[EUR][1000 genomes]
rs667730	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs668625	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs671321	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs676038	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs684729	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs684857	0.81[EUR][1000 genomes]
rs694613	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83309000-83314600	Enhancers	Fetal Brain Male	brain
2	chr11:83310600-83311800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:83311000-83312400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:83311000-83312400	Enhancers	Fetal Brain Female	brain
5	chr11:83311400-83311800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:83311400-83312000	Enhancers	Brain Anterior Caudate	brain
7	chr11:83311600-83311800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr11:83311600-83312000	Enhancers	Brain Angular Gyrus	brain
9	chr11:83311600-83312000	Enhancers	Brain Hippocampus Middle	brain
10	chr11:83311600-83312000	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links