Variant report

Variant	rs684729
Chromosome Location	chr11:83334530-83334531
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83333082..83335940-chr11:83337956..83341610,3	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1228632	0.91[CEU][hapmap];0.82[CHB][hapmap]
rs1233917	0.82[EUR][1000 genomes]
rs2436152	0.84[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs2436154	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2436158	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs2508720	0.84[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap]
rs472415	0.84[CEU][hapmap]
rs473255	0.84[CEU][hapmap];0.95[JPT][hapmap]
rs477046	0.87[CEU][hapmap];0.82[CHB][hapmap]
rs478048	0.91[CEU][hapmap];0.82[CHB][hapmap]
rs483020	0.84[CEU][hapmap];0.94[JPT][hapmap]
rs488600	0.83[CEU][hapmap];0.95[JPT][hapmap]
rs489567	0.86[CHB][hapmap]
rs494071	0.83[CEU][hapmap];0.95[JPT][hapmap]
rs500059	0.83[CEU][hapmap]
rs500359	0.84[CEU][hapmap];0.95[JPT][hapmap]
rs500571	0.91[CEU][hapmap]
rs500578	0.88[ASN][1000 genomes]
rs501139	0.95[JPT][hapmap]
rs505621	0.83[CEU][hapmap]
rs505998	0.87[CEU][hapmap]
rs506718	0.83[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs511740	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs513020	0.83[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs518143	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs531531	0.83[CEU][hapmap];0.95[JPT][hapmap]
rs533209	0.83[CEU][hapmap];0.95[JPT][hapmap]
rs535809	0.83[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs553935	0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs558350	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs558426	0.83[CEU][hapmap];0.95[JPT][hapmap]
rs575952	0.84[CEU][hapmap];0.95[JPT][hapmap]
rs579420	0.81[CEU][hapmap];0.95[JPT][hapmap]
rs581178	0.83[CEU][hapmap];0.95[JPT][hapmap]
rs582207	0.91[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs583944	0.88[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs585240	0.84[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs590014	0.83[CEU][hapmap];0.95[JPT][hapmap]
rs598934	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs600570	0.83[CEU][hapmap];0.95[JPT][hapmap]
rs601826	0.83[CEU][hapmap];0.95[JPT][hapmap]
rs603174	0.84[CEU][hapmap];0.95[JPT][hapmap]
rs605303	0.84[CEU][hapmap];0.95[JPT][hapmap]
rs605825	0.83[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap]
rs611766	0.88[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs630105	0.82[CEU][hapmap];0.94[JPT][hapmap]
rs631277	0.84[CEU][hapmap];0.95[JPT][hapmap]
rs633191	0.84[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs634368	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs641838	0.83[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs651491	0.90[CHB][hapmap]
rs654442	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs656537	0.82[EUR][1000 genomes]
rs661927	0.84[CEU][hapmap];0.95[JPT][hapmap]
rs662966	0.83[CEU][hapmap];0.95[JPT][hapmap]
rs663399	0.83[CEU][hapmap];0.95[JPT][hapmap]
rs666845	0.83[CEU][hapmap]
rs667730	0.83[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap]
rs668625	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs671321	0.83[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap]
rs684857	0.83[CEU][hapmap]
rs688997	0.91[CHB][hapmap]
rs694613	0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83324200-83341200	Weak transcription	Brain Anterior Caudate	brain
2	chr11:83324400-83340400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:83334200-83335000	Enhancers	NHEK	skin

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