Variant report

Variant	rs500578
Chromosome Location	chr11:83321583-83321584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83320562..83322405-chr11:83324289..83326675,2	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10898136	0.80[EUR][1000 genomes]
rs1225904	0.80[EUR][1000 genomes]
rs1225906	0.81[EUR][1000 genomes]
rs1225907	0.81[EUR][1000 genomes]
rs1228630	0.81[EUR][1000 genomes]
rs1897373	0.85[EUR][1000 genomes]
rs2248115	0.85[EUR][1000 genomes]
rs2436151	0.84[EUR][1000 genomes]
rs2436152	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2436154	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2436157	0.81[EUR][1000 genomes]
rs2436158	0.85[EUR][1000 genomes]
rs2508717	0.83[EUR][1000 genomes]
rs2508720	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2512689	0.81[EUR][1000 genomes]
rs4500510	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs473255	0.81[EUR][1000 genomes]
rs488600	0.85[EUR][1000 genomes]
rs489752	0.85[EUR][1000 genomes]
rs491592	0.85[EUR][1000 genomes]
rs491633	0.85[EUR][1000 genomes]
rs494071	0.85[EUR][1000 genomes]
rs500359	0.86[EUR][1000 genomes]
rs501139	0.81[EUR][1000 genomes]
rs506718	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs513020	0.86[EUR][1000 genomes]
rs526787	0.85[EUR][1000 genomes]
rs531531	0.82[EUR][1000 genomes]
rs533209	0.82[EUR][1000 genomes]
rs534325	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs535809	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs536566	0.85[EUR][1000 genomes]
rs544159	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs544921	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs553935	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs558350	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs558426	0.85[EUR][1000 genomes]
rs575952	0.81[EUR][1000 genomes]
rs579420	0.83[EUR][1000 genomes]
rs581178	0.81[EUR][1000 genomes]
rs582207	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs583944	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs585240	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs590014	0.85[EUR][1000 genomes]
rs598934	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs600570	0.82[EUR][1000 genomes]
rs601826	0.82[EUR][1000 genomes]
rs603174	0.87[EUR][1000 genomes]
rs605303	0.85[EUR][1000 genomes]
rs605825	0.85[EUR][1000 genomes]
rs611766	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs614398	0.81[EUR][1000 genomes]
rs622934	0.84[EUR][1000 genomes]
rs625091	0.81[EUR][1000 genomes]
rs630105	0.81[EUR][1000 genomes]
rs631277	0.81[EUR][1000 genomes]
rs633191	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs634368	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs638692	0.85[EUR][1000 genomes]
rs638746	0.85[EUR][1000 genomes]
rs641838	0.86[EUR][1000 genomes]
rs643835	0.84[EUR][1000 genomes]
rs654442	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs656537	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs661927	0.85[EUR][1000 genomes]
rs662966	0.81[EUR][1000 genomes]
rs663399	0.81[EUR][1000 genomes]
rs667730	0.85[EUR][1000 genomes]
rs668625	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs671321	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs676038	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs684729	0.88[ASN][1000 genomes]
rs694613	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83317000-83322800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:83318400-83324400	Enhancers	Fetal Brain Male	brain
3	chr11:83318600-83321600	Enhancers	Brain Substantia Nigra	brain
4	chr11:83318600-83321800	Enhancers	Brain Cingulate Gyrus	brain
5	chr11:83319200-83322800	Weak transcription	Brain Angular Gyrus	brain
6	chr11:83319600-83322200	Enhancers	Brain Hippocampus Middle	brain
7	chr11:83320000-83321800	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr11:83320200-83323200	Enhancers	Fetal Brain Female	brain
9	chr11:83320400-83321600	Enhancers	Brain Anterior Caudate	brain
10	chr11:83321000-83321600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links